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COL6A2
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  • COL6A2
TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:384.1 nTPM
HPA:128.9 nTPM
GTEx:384.1 nTPM
FANTOM5:193.7 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA007029Antibody HPA030920Antibody HPA038799
Glandular cells LowMediumNot detected






SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

128.9
overview
Male, age 65
Small intestine sample 232
nTPM: 85.2
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 113.1
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 172.1
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 145.2

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

384.1
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 384.1
Samples: 187

Max nTPM: 1773.1
Min nTPM: 84.3
Std nTPM: 338.1
Median nTPM: 237.8
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 1773.1
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 1636.0
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 1361.8
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 1324.7
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 1296.4
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 1277.1
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 1178.3
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 1178.2
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 1165.7
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 1158.6
GTEX-1192X-2526-SM-59868 50-59 years, male 1126.6
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 1125.8
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 1071.0
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 1070.3
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 1045.4
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 1042.9
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 1026.2
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 1005.5
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 993.5
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 969.8
GTEX-117YX-0326-SM-5GICL 50-59 years, male 947.4
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 908.7
GTEX-13111-1426-SM-5DUW3 50-59 years, male 901.5
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 885.5
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 869.4
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 867.4
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 816.4
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 795.9
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 777.4
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 708.0
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 661.2
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 655.4
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 651.4
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 620.9
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 602.3
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 564.1
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 548.2
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 525.4
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 503.1
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 502.8
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 489.9
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 478.1
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 465.5
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 464.1
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 463.4
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 445.7
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 429.0
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 428.8
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 421.0
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 408.6
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 397.3
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 396.2
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 395.5
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 393.4
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 393.2
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 382.7
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 358.6
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 353.2
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 345.3
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 341.6
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 341.2
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 333.1
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 330.9
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 322.9
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 322.1
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 316.5
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 316.2
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 313.8
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 310.3
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 309.4
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 307.4
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 306.9
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 305.8
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 303.0
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 301.7
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 300.3
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 294.0
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 293.1
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 289.7
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 288.6
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 287.9
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 285.9
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 283.2
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 280.8
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 276.4
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 275.7
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 266.4
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 263.7
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 263.5
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 251.8
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 249.0
GTEX-13113-1226-SM-5EGHT 60-69 years, female 243.8
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 239.1
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 237.8
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 235.2
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 233.8
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 232.9
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 231.9
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 229.9
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 228.8
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 226.7
GTEX-183FY-1626-SM-793D8 20-29 years, male 220.6
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 218.4
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 217.7
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 215.2
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 209.6
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 209.0
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 208.2
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 206.8
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 205.7
GTEX-14PK6-1626-SM-6871I 70-79 years, female 205.6
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 204.3
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 201.7
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 199.7
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 197.7
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 196.9
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 194.8
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 193.7
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 192.6
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 192.2
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 188.1
GTEX-1C475-1426-SM-793CH 40-49 years, female 188.1
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 187.7
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 187.7
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 187.5
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 185.0
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 183.7
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 182.1
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 181.2
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 179.8
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 179.5
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 179.2
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 178.3
GTEX-13O61-1326-SM-5KM31 60-69 years, male 177.6
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 176.9
GTEX-14PKU-1626-SM-6871C 40-49 years, female 176.0
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 173.0
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 172.1
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 171.3
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 171.0
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 168.6
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 167.6
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 167.2
GTEX-144GM-1026-SM-79OKU 20-29 years, male 163.5
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 162.9
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 160.8
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 159.9
GTEX-YFCO-1326-SM-664NV 40-49 years, male 157.4
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 154.7
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 153.9
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 151.3
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 151.0
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 149.3
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 148.4
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 148.1
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 146.7
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 146.5
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 145.5
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 145.2
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 144.7
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 143.5
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 139.6
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 138.6
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 138.4
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 137.9
GTEX-ZTSS-0926-SM-59865 40-49 years, male 137.6
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 136.1
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 133.7
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 132.0
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 131.8
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 131.4
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 129.5
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 129.1
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 128.3
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 126.0
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 125.6
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 124.5
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 123.8
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 123.1
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 115.2
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 114.0
GTEX-1122O-1326-SM-5H11F 60-69 years, female 107.8
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 104.2
GTEX-14PN3-2026-SM-68729 60-69 years, female 99.4
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 95.1
GTEX-111YS-1426-SM-5GID8 60-69 years, male 89.9
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 84.3
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

193.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 193.7
FF:10024-101D6 15,40,85 years, mixed 193.7

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