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COL6A2
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  • COL6A2
TISSUE PRIMARY DATA SALIVARY GLAND Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Salivary gland
Tissue proteome
Salivary gland
SALIVARY GLAND - Expression summary
Protein expression
Salivary glandi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:149.0 nTPM
HPA:79.0 nTPM
GTEx:149.0 nTPM
FANTOM5:410.7 Scaled Tags Per Million

SALIVARY GLAND - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA007029Antibody HPA030920Antibody HPA038799
Glandular cells Not detectedNot detectedNot detected







SALIVARY GLAND - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

79.0
overview
Female, age 68
Salivary gland sample 216
nTPM: 120.1
Cell types%
Glandular cells:
45

Ductal cells:
25

Adipocytes:
5

Other cell types:
25

overview
Male, age 60
Salivary gland sample 217
nTPM: 48.1
Cell types%
Glandular cells:
55

Ductal cells:
20

Adipocytes:
5

Endothelial cells:
5

Other cell types:
15

overview
Female, age 21
Salivary gland sample 218
nTPM: 68.7
Cell types%
Glandular cells:
55

Ductal cells:
15

Adipocytes:
5

Endothelial cells:
5

Other cell types:
20


SALIVARY GLAND - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

149.0
GTEx sample id Sample description nTPM
Minor Salivary Gland
Average nTPM: 149.0
Samples: 162

Max nTPM: 498.5
Min nTPM: 46.6
Std nTPM: 65.9
Median nTPM: 136.7
GTEX-ZC5H-2726-SM-5KLZW 40-49 years, female 498.5
GTEX-13CF2-2426-SM-5LZYL 60-69 years, male 389.0
GTEX-ZAB5-2326-SM-5IJFR 50-59 years, male 372.2
GTEX-1I1HK-2526-SM-A96SM 60-69 years, male 329.7
GTEX-1J8EW-2826-SM-A96T9 60-69 years, female 323.1
GTEX-XMK1-2626-SM-4B65R 40-49 years, male 293.0
GTEX-WY7C-1426-SM-4OND1 50-59 years, male 268.7
GTEX-1I6K7-0926-SM-A96SV 40-49 years, male 258.8
GTEX-1JN6P-2526-SM-CNNPX 60-69 years, male 252.2
GTEX-Y3I4-1926-SM-4TT8L 50-59 years, male 250.8
GTEX-13JVG-2926-SM-5J2N9 60-69 years, male 249.4
GTEX-131XH-2626-SM-5GCNP 50-59 years, male 249.1
GTEX-1QMI2-0426-SM-EWRND 60-69 years, male 247.7
GTEX-1R9K5-0626-SM-DPRZB 50-59 years, male 239.3
GTEX-ZQG8-2126-SM-4YCF1 60-69 years, female 234.5
GTEX-ZA64-1726-SM-5CVMF 20-29 years, male 233.7
GTEX-14JIY-3026-SM-6EU1R 60-69 years, male 226.3
GTEX-1PPH8-1526-SM-E6CQO 20-29 years, male 225.9
GTEX-11ZTS-3026-SM-5EQM7 60-69 years, female 224.6
GTEX-17KNJ-2726-SM-7KFRE 50-59 years, male 221.0
GTEX-18A67-0626-SM-7KFSL 50-59 years, male 219.2
GTEX-1AYD5-2726-SM-7MXVG 50-59 years, male 218.6
GTEX-1QEPI-0626-SM-E76QE 60-69 years, female 218.0
GTEX-1S83E-0626-SM-E9TKC 40-49 years, male 210.7
GTEX-13111-2326-SM-5LZUQ 50-59 years, male 203.2
GTEX-1J8QM-1826-SM-A96TA 60-69 years, female 201.7
GTEX-1C6VR-0726-SM-7P8OV 60-69 years, male 201.4
GTEX-131XF-2826-SM-5EGKH 60-69 years, male 196.7
GTEX-1IY9M-2926-SM-A96TH 60-69 years, male 193.1
GTEX-11TUW-2426-SM-5EQKB 60-69 years, male 192.3
GTEX-Y5V6-2226-SM-4VDTC 60-69 years, male 191.5
GTEX-ZE7O-2926-SM-51MSG 50-59 years, female 189.2
GTEX-1H4P4-2026-SM-9WPNV 50-59 years, male 189.2
GTEX-X15G-2126-SM-4PQZR 50-59 years, female 188.6
GTEX-1445S-2926-SM-5O993 60-69 years, male 187.6
GTEX-1MCQQ-2226-SM-DLHC4 60-69 years, male 186.3
GTEX-1OJC4-3126-SM-EXOJK 50-59 years, female 185.3
GTEX-WYVS-2026-SM-4RGNS 40-49 years, female 183.5
GTEX-1LVA9-2526-SM-EVR5H 50-59 years, male 179.2
GTEX-ZXG5-2826-SM-5NQ8T 60-69 years, male 178.4
GTEX-1PIEJ-0626-SM-DTX99 20-29 years, female 175.8
GTEX-145ME-1626-SM-5RQI3 40-49 years, female 174.4
GTEX-17MFQ-1626-SM-7938Z 20-29 years, male 171.7
GTEX-1H1CY-2326-SM-9OSXW 60-69 years, female 171.2
GTEX-1314G-2026-SM-5LZUM 30-39 years, male 170.9
GTEX-1C64O-0626-SM-7DHL1 60-69 years, male 170.1
GTEX-111FC-2926-SM-5GZY7 60-69 years, male 168.8
GTEX-1KD4Q-2526-SM-CXZKL 40-49 years, male 168.5
GTEX-1AX9K-2126-SM-72D7K 50-59 years, male 168.4
GTEX-1B8KZ-1726-SM-73KV7 50-59 years, male 166.3
GTEX-13NYB-2426-SM-5IFF4 40-49 years, male 165.3
GTEX-1NSGN-0626-SM-E9J35 50-59 years, male 165.1
GTEX-1GN1V-2926-SM-9JGI3 60-69 years, male 163.1
GTEX-1HSEH-1826-SM-A96SA 60-69 years, male 163.0
GTEX-13113-1526-SM-5EGHV 60-69 years, female 157.6
GTEX-1OJC3-1026-SM-E6CQK 20-29 years, male 156.6
GTEX-1C64N-2926-SM-79OLM 50-59 years, male 155.7
GTEX-1IOXB-2826-SM-AHZ32 50-59 years, male 155.5
GTEX-YF7O-2226-SM-5CVN8 50-59 years, male 155.3
GTEX-WOFM-2126-SM-4OOSR 20-29 years, male 154.7
GTEX-15EU6-2626-SM-7KUN4 50-59 years, male 152.9
GTEX-1LVAO-2626-SM-EVR4S 60-69 years, male 152.3
GTEX-1B8SF-1826-SM-731DJ 60-69 years, male 151.9
GTEX-1HR9M-2526-SM-A9G3J 60-69 years, male 150.6
GTEX-15CHC-1226-SM-686ZH 60-69 years, female 149.9
GTEX-1R9PM-1726-SM-E8VOA 20-29 years, male 149.5
GTEX-1J1R8-1826-SM-AHZ3B 40-49 years, male 148.1
GTEX-13OVI-2326-SM-5KM47 60-69 years, female 146.8
GTEX-178AV-1426-SM-6LLID 40-49 years, male 146.7
GTEX-13QBU-2126-SM-5KLZN 40-49 years, female 146.6
GTEX-11NV4-1926-SM-5N9D4 60-69 years, male 145.8
GTEX-1GTWX-2526-SM-9JGHG 60-69 years, male 143.8
GTEX-1HFI7-2426-SM-B2LXV 50-59 years, female 143.3
GTEX-1R9PO-2626-SM-E6CPU 60-69 years, female 143.2
GTEX-ZQUD-2126-SM-51MSY 30-39 years, male 142.7
GTEX-1AX8Z-0626-SM-731EH 60-69 years, male 140.4
GTEX-13G51-2426-SM-5LZY8 60-69 years, male 140.1
GTEX-ZLWG-2026-SM-DO11F 50-59 years, female 140.1
GTEX-1MGNQ-1926-SM-DTX8L 40-49 years, male 138.0
GTEX-Y111-2626-SM-4TT24 50-59 years, male 137.4
GTEX-11P81-2026-SM-5P9GT 30-39 years, female 136.9
GTEX-13O21-1926-SM-5MR39 50-59 years, male 136.5
GTEX-XGQ4-2626-SM-4AT6B 50-59 years, male 136.2
GTEX-14PN4-2526-SM-686ZG 50-59 years, male 136.1
GTEX-1P4AB-2926-SM-EXOJR 50-59 years, male 134.7
GTEX-1MCC2-2226-SM-EV7AJ 30-39 years, female 134.1
GTEX-1GPI7-0326-SM-7MKH6 20-29 years, male 133.9
GTEX-1GMR2-2026-SM-7MKHK 50-59 years, male 132.0
GTEX-1HSMQ-0926-SM-A96SI 50-59 years, male 128.6
GTEX-1POEN-2226-SM-DPRXV 30-39 years, female 128.4
GTEX-1IDJC-1626-SM-AHZ2R 50-59 years, male 127.6
GTEX-11P82-0926-SM-5986X 20-29 years, male 127.2
GTEX-1QCLZ-2526-SM-EXUST 60-69 years, female 127.1
GTEX-1RAZA-0626-SM-EAZ4H 20-29 years, male 127.0
GTEX-18QFQ-0626-SM-718AW 30-39 years, male 125.7
GTEX-XV7Q-2426-SM-4BRV8 40-49 years, female 125.0
GTEX-11WQK-2926-SM-5EQKT 50-59 years, male 124.7
GTEX-X5EB-1726-SM-4E3J7 40-49 years, male 124.2
GTEX-13QJC-2326-SM-5Q5CD 60-69 years, female 122.5
GTEX-14PJN-1726-SM-69LO7 30-39 years, male 121.6
GTEX-WFJO-2026-SM-4LVM3 30-39 years, male 120.9
GTEX-1GZ2Q-2526-SM-9KNVW 40-49 years, male 120.1
GTEX-1EH9U-2926-SM-7DHLX 60-69 years, male 120.0
GTEX-18A7B-2826-SM-7KFTK 70-79 years, male 118.6
GTEX-11EMC-2526-SM-5PNVU 60-69 years, female 117.9
GTEX-14PJ3-1526-SM-664O9 50-59 years, male 117.2
GTEX-1IE54-0826-SM-AHZ2Z 40-49 years, female 116.9
GTEX-13OVK-1826-SM-6PALE 40-49 years, male 114.0
GTEX-X3Y1-1926-SM-4PQZO 40-49 years, male 113.8
GTEX-1I4MK-1326-SM-B2LWT 50-59 years, female 112.3
GTEX-YB5K-1726-SM-5IFIZ 40-49 years, female 112.0
GTEX-1GF9X-0226-SM-7P8SM 40-49 years, female 111.4
GTEX-ZT9W-2126-SM-51MSF 50-59 years, male 111.3
GTEX-ZG7Y-2426-SM-DO11H 50-59 years, male 110.7
GTEX-12WSN-2226-SM-5DUXT 40-49 years, male 110.5
GTEX-12WSM-1826-SM-5BC64 60-69 years, male 110.0
GTEX-11EQ9-2026-SM-5P9JI 30-39 years, male 107.5
GTEX-1LSNL-2626-SM-EV7AT 50-59 years, male 106.7
GTEX-1R9K4-0526-SM-E76P1 60-69 years, male 106.4
GTEX-1LBAC-0626-SM-D3L9T 20-29 years, male 106.2
GTEX-13OVL-2926-SM-5IFG3 50-59 years, male 105.9
GTEX-WH7G-2126-SM-4M1XU 40-49 years, male 105.5
GTEX-WHSB-2326-SM-4M1XK 50-59 years, male 105.1
GTEX-146FR-1226-SM-5SIA7 60-69 years, female 103.0
GTEX-1C4CL-2026-SM-731EB 30-39 years, male 102.4
GTEX-1JN1M-2426-SM-ARU93 60-69 years, female 101.6
GTEX-14E1K-2626-SM-664OJ 50-59 years, male 101.0
GTEX-1HSGN-0626-SM-A9G2E 40-49 years, female 100.3
GTEX-1S82P-0726-SM-EVR4O 60-69 years, female 99.9
GTEX-ZPU1-2326-SM-57WEP 40-49 years, male 98.7
GTEX-ZF29-2126-SM-DNZYX 60-69 years, female 98.2
GTEX-X261-2426-SM-4PQZU 50-59 years, male 95.3
GTEX-1CB4I-2526-SM-7MKG1 50-59 years, male 95.1
GTEX-ZP4G-1926-SM-57WDZ 20-29 years, female 94.9
GTEX-12WSL-2126-SM-5GCNG 50-59 years, male 94.1
GTEX-11ZTT-2226-SM-5CVLP 60-69 years, female 93.0
GTEX-1AMEY-1126-SM-72D79 30-39 years, female 92.7
GTEX-1117F-3026-SM-5GZYU 60-69 years, female 91.1
GTEX-12BJ1-2226-SM-5BC6G 60-69 years, male 90.9
GTEX-Y5LM-1826-SM-4VDT9 40-49 years, female 89.7
GTEX-1LC47-2426-SM-DHXKK 60-69 years, male 88.7
GTEX-1RNSC-2926-SM-EV79L 60-69 years, male 88.6
GTEX-1QP9N-2026-SM-DPRZT 30-39 years, male 85.0
GTEX-1KD5A-2226-SM-EV79U 50-59 years, male 79.9
GTEX-1GN1W-2526-SM-9JGHX 50-59 years, female 79.5
GTEX-1I6K6-0626-SM-ARU7J 30-39 years, male 78.6
GTEX-ZLFU-2226-SM-EXUS7 40-49 years, male 78.2
GTEX-14B4R-1426-SM-5Q5CG 30-39 years, male 77.1
GTEX-1KANC-1326-SM-CYPT8 50-59 years, female 75.0
GTEX-1192X-2926-SM-5N9BA 50-59 years, male 73.5
GTEX-1B932-0626-SM-731EM 40-49 years, female 72.7
GTEX-1HCU7-0126-SM-C1YR3 50-59 years, male 72.6
GTEX-1B97J-2126-SM-79OL6 50-59 years, female 72.2
GTEX-15RJE-2726-SM-6LPJ1 40-49 years, male 71.3
GTEX-1JKYR-0726-SM-AHZ3K 20-29 years, male 71.3
GTEX-18D9U-2226-SM-7KFTN 40-49 years, male 70.6
GTEX-1IDJD-2526-SM-C1YSA 30-39 years, male 70.1
GTEX-1LKK1-2926-SM-EVR4Z 50-59 years, female 69.3
GTEX-1339X-2326-SM-5HL5B 40-49 years, male 68.7
GTEX-1A3MV-1726-SM-72D68 30-39 years, male 65.7
GTEX-15SHV-2226-SM-6M464 60-69 years, male 57.1
GTEX-13VXT-1726-SM-5IFF5 20-29 years, female 46.6
Show allShow less

SALIVARY GLAND - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

410.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Parotid gland
Scaled Tags Per Million: 410.7
FF:10199-103F1 23 years, male 410.7
Salivary gland
Scaled Tags Per Million: 168.1
FF:10093-102C3 16-60 years, mixed 168.1
Submaxillary gland
Scaled Tags Per Million: 257.7
FF:10202-103F4 24 years, male 257.7

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