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RPS11
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  • RPS11
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:1384.9 nTPM
FANTOM5:224.9 Scaled Tags Per Million
Pig:206.3 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA049719
Glial cells Not detected
Neuronal cells Not detected



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1384.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 1384.9
Samples: 246

Max nTPM: 3199.7
Min nTPM: 581.4
Std nTPM: 374.1
Median nTPM: 1312.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 3199.7
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 2705.4
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 2692.6
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 2490.9
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 2430.0
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 2411.6
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 2352.2
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 2307.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 2296.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 2143.6
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 2122.5
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 2121.9
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 2106.7
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 2090.0
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 2002.8
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 1974.2
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 1958.2
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 1929.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 1918.2
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 1900.3
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 1898.3
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 1889.6
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 1878.8
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 1867.3
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 1854.1
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 1849.2
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 1828.3
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 1826.6
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 1820.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 1787.5
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 1784.8
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 1767.2
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 1760.4
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 1756.9
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 1745.7
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 1734.0
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 1717.4
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 1715.0
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 1714.8
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 1702.0
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 1694.1
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 1692.7
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 1691.6
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 1679.3
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 1668.2
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 1667.4
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 1663.5
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 1663.4
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 1658.1
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 1650.0
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 1637.9
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 1636.5
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 1631.6
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 1630.6
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 1615.1
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 1605.5
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 1604.3
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 1600.8
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 1599.2
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 1574.6
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 1560.0
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 1550.9
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 1535.6
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 1530.6
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 1525.9
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 1524.1
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 1522.4
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 1513.5
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 1513.1
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 1511.3
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 1507.7
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 1485.3
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 1484.5
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 1484.4
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 1480.4
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 1479.6
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 1474.6
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 1474.4
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 1472.3
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 1471.4
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 1469.4
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 1463.0
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 1460.5
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 1459.4
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 1457.0
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 1457.0
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 1455.0
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 1452.1
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 1440.9
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 1440.6
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 1439.9
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 1427.2
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 1423.6
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 1418.5
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 1417.2
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 1413.6
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 1410.5
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 1400.6
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 1399.8
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 1399.4
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 1399.0
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 1388.5
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 1377.9
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 1374.9
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 1372.6
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 1360.6
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 1359.8
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 1357.9
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 1357.1
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 1356.7
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 1349.0
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 1341.0
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 1340.9
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 1337.6
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 1337.4
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 1336.9
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 1326.4
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 1318.9
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 1317.1
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 1316.4
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 1316.1
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 1313.4
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 1312.7
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 1312.7
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 1309.7
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 1308.6
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 1308.3
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 1307.9
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 1305.2
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 1304.5
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 1301.5
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 1298.9
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 1298.3
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 1298.2
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 1296.3
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 1294.5
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 1294.3
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 1290.9
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 1290.0
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 1286.9
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 1281.7
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 1280.9
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 1280.3
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 1277.7
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 1277.2
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 1275.6
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 1273.0
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 1269.7
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 1266.4
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 1263.2
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 1255.9
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 1255.5
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 1244.7
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 1237.7
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 1233.7
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 1224.0
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 1223.6
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 1222.9
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 1221.6
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 1214.8
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 1210.4
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 1208.5
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 1208.5
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 1208.3
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 1206.7
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 1206.4
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 1204.6
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 1202.7
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 1197.7
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 1197.4
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 1192.8
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 1190.9
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 1184.1
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 1183.1
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 1182.7
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 1181.5
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 1177.4
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 1176.8
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 1170.3
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 1168.2
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 1159.6
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 1153.3
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 1148.8
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 1142.2
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 1131.9
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 1124.8
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 1122.6
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 1121.9
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 1112.0
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 1111.8
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 1110.6
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 1099.9
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 1097.9
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 1095.1
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 1094.8
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 1094.6
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 1093.8
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 1093.4
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 1086.8
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 1081.9
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 1080.6
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 1072.3
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 1070.3
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 1070.2
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 1067.6
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 1061.4
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 1058.7
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 1050.3
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 1045.3
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 1026.9
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 1021.1
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 1019.5
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 1016.3
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 1014.7
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 1003.5
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 999.8
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 997.1
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 996.4
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 994.9
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 992.5
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 991.7
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 974.2
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 971.9
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 961.6
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 961.2
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 956.3
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 956.2
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 953.8
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 940.8
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 930.9
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 928.3
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 913.1
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 903.6
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 883.6
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 877.7
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 872.9
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 868.2
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 868.1
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 859.3
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 858.4
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 853.9
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 836.9
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 799.8
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 779.4
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 721.8
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 581.4
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

224.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 224.9
FF:10164-103B2 76 years, female 224.9

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

206.3
Pig sample Sample description nTPM
Caudate
nTPM: 206.3
Samples: 4

Max nTPM: 230.9
Min nTPM: 175.0
Sample A Female 206.5
Sample B Female 212.8
Sample C Male 230.9
Sample D Male 175.0

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