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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:2815.9 nTPM
GTEx:2815.9 nTPM
FANTOM5:907.3 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA049719
Squamous epithelial cells Low


VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2815.9
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 2815.9
Samples: 156

Max nTPM: 7299.9
Min nTPM: 1419.9
Std nTPM: 780.2
Median nTPM: 2623.6
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 7299.9
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 5830.9
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 4737.9
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 4677.9
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 4388.7
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 4300.4
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 4298.0
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 4255.8
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 4223.6
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 4202.7
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 4111.8
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 4018.3
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 3991.5
GTEX-16NPV-2526-SM-6M483 50-59 years, female 3960.5
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 3960.1
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 3682.7
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 3682.0
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 3675.7
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 3642.2
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 3581.0
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 3542.4
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 3512.3
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 3505.1
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 3401.4
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 3399.4
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 3391.4
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 3378.8
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 3356.3
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 3343.4
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 3334.6
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 3321.1
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 3296.0
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 3289.1
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 3285.5
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 3280.5
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 3239.5
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 3236.5
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 3226.1
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 3199.5
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 3174.5
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 3157.4
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 3124.2
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 3122.0
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 3113.1
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 3106.5
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 3097.0
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 3096.4
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 3088.2
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 3079.6
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 3073.8
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 3070.0
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 3044.7
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 2996.1
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 2995.7
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 2973.3
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 2948.4
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 2944.1
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 2916.0
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 2914.7
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 2899.8
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 2818.0
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 2800.0
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 2787.5
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 2782.5
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 2769.6
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 2769.1
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 2763.8
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 2758.9
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 2735.9
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 2729.0
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 2708.4
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 2701.6
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 2696.5
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 2673.1
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 2651.5
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 2632.4
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 2627.3
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 2625.5
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 2621.7
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 2617.1
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 2595.7
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 2589.5
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 2578.9
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 2551.1
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 2550.2
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 2545.2
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 2541.9
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 2491.1
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 2489.3
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 2469.7
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 2449.7
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 2436.0
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 2435.9
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 2426.6
GTEX-QCQG-1226-SM-48U23 50-59 years, female 2425.0
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 2421.0
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 2418.1
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 2416.2
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 2414.7
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 2411.8
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 2403.9
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 2401.5
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 2399.9
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 2396.6
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 2385.0
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 2372.9
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 2367.7
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 2356.3
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 2350.1
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 2339.7
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 2338.5
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 2331.9
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 2314.5
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 2309.4
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 2303.7
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 2302.6
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 2296.6
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 2292.6
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 2283.7
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 2263.9
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 2244.4
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 2237.5
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 2235.1
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 2232.9
GTEX-S341-1226-SM-4AD5S 40-49 years, female 2230.5
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 2228.7
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 2228.4
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 2218.9
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 2204.0
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 2201.9
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 2190.9
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 2186.0
GTEX-1C475-0526-SM-793AC 40-49 years, female 2176.0
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 2173.3
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 2170.1
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 2166.3
GTEX-11I78-2026-SM-5987C 50-59 years, female 2150.4
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 2133.9
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 2128.0
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 2123.3
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 2096.0
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 2092.6
GTEX-14PKU-1326-SM-6871B 40-49 years, female 2085.0
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 2073.9
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 2055.4
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 2044.8
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 2020.3
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 1979.3
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 1968.6
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 1958.0
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 1867.3
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 1862.6
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 1819.5
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 1678.1
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 1662.8
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 1419.9
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

907.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 907.3
FF:10204-103F6 68 years, female 907.3

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