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  • RPL13A
TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1109.1 nTPM
HPA Brain:461.5 nTPM
GTEx:1109.1 nTPM
FANTOM5:81.3 Scaled Tags Per Million
Pig:7.8 nTPM
Mouse:953.4 nTPM
Allen mouse:20.0 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

461.5
Sample id Sample description nTPM
Amygdala
nTPM: 434.8
2695 Female, age 67, right hemisphere 546.4
2514 Male, age 75, right hemisphere 472.5
2517 Female, age 94, left hemisphere 404.7
1987 Female, age 91, left hemisphere 387.7
2814 Male, age 76, right hemisphere 362.9
Basal amygdala
nTPM: 382.4
2827 Female, age 67, right hemisphere 576.5
2609 Male, age 75, right hemisphere 451.7
2685 Female, age 94, left hemisphere 355.8
2110 Male, age 80, left hemisphere 327.1
2243 Female, age 91, right hemisphere 297.9
1955 Male, age 76, both hemispheres 285.3
Central amygdala
nTPM: 425.1
2826 Female, age 94, left hemisphere 737.8
2515 Male, age 75, right hemisphere 479.9
2239 Male, age 80, left hemisphere 312.2
1905 Male, age 76, both hemispheres 311.5
2701 Female, age 91, right hemisphere 283.9
Corticomedial amygdala
nTPM: 328.8
2428 Male, age 75, right hemisphere 453.7
2535 Female, age 67, right hemisphere 377.5
2829 Male, age 80, left hemisphere 346.8
2242 Female, age 91, right hemisphere 287.1
2429 Female, age 94, left hemisphere 263.1
2240 Male, age 76, both hemispheres 244.4
Lateral amygdala
nTPM: 461.5
2830 Female, age 67, right hemisphere 749.2
2516 Male, age 75, right hemisphere 528.6
2534 Female, age 94, left hemisphere 484.4
2256 Male, age 80, left hemisphere 419.6
1883 Male, age 76, both hemispheres 299.3
2255 Female, age 91, right hemisphere 288.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1109.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 1109.1
Samples: 152

Max nTPM: 2816.8
Min nTPM: 363.7
Std nTPM: 410.1
Median nTPM: 1035.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 2816.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 2525.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 2496.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 2293.3
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 2128.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 2061.4
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 2048.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 2014.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 1882.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1860.7
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 1795.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1750.6
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 1688.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 1666.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 1659.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1634.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 1623.6
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 1575.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 1569.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 1561.1
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 1560.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 1521.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1519.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 1469.5
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 1463.9
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 1449.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 1443.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 1404.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 1386.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 1351.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 1311.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 1309.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1302.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 1301.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 1295.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1274.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 1264.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1261.4
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 1258.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 1255.4
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 1228.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 1202.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 1200.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 1185.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 1176.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1170.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 1168.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 1166.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1158.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 1157.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 1156.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 1155.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 1153.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 1148.0
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 1138.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 1135.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1135.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 1129.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1121.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 1117.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 1110.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 1104.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 1103.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 1101.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 1093.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 1086.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 1081.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 1073.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 1067.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1064.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 1060.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 1057.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 1052.1
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 1047.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 1045.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 1040.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 1030.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 1021.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 1021.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 1007.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 999.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 996.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 988.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 983.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 981.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 979.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 978.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 977.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 953.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 952.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 947.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 940.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 937.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 935.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 934.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 934.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 933.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 928.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 909.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 909.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 896.9
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 889.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 886.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 885.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 874.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 872.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 869.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 868.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 868.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 858.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 851.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 846.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 836.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 816.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 811.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 808.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 804.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 803.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 801.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 789.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 788.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 783.4
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 782.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 769.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 762.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 762.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 755.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 750.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 749.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 748.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 747.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 741.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 730.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 726.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 720.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 720.1
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 718.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 700.5
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 696.6
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 692.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 677.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 672.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 659.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 655.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 639.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 637.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 617.8
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 617.1
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 586.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 536.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 507.5
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 363.7
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

81.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 81.3
FF:10151-102I7 76 years, female 81.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

7.8
Pig sample Sample description nTPM
Amygdala
nTPM: 7.9
Samples: 4

Max nTPM: 11.1
Min nTPM: 4.7
Sample A Female 11.1
Sample B Female 6.9
Sample C Male 8.7
Sample D Male 4.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

953.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 953.4
Samples: 4

Max nTPM: 1011.9
Min nTPM: 891.6
Sample A Male 932.1
Sample B Male 1011.9
Sample C Female 978.0
Sample D Female 891.6

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

20.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 20.0
71764512 Antisense, RP_050926_01_C10, Mouse strain C57BL/6J (56 days, male) 20.0

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