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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
217.7
nTPM
FANTOM5:
391.2
Scaled Tags Per Million
Pig:
422.6
nTPM
Allen mouse:
3.7
Expression energy
PONS - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
217.7
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 180.5
2301
Female, age 85, both hemispheres
238.6
2090
Male, age 80, both hemispheres
175.0
2188
Female, age 91, both hemispheres
173.1
1984
Male, age 76, both hemispheres
135.5
Dorsal cochlear nucleus nTPM: 171.0
2370
Male, age 61, both hemispheres
197.1
2187
Female, age 91, both hemispheres
181.0
2058
Male, age 76, both hemispheres
162.6
2802
Male, age 74, right hemisphere
157.6
2378
Male, age 80, both hemispheres
156.9
Dorsal tegmental nucleus nTPM: 217.7
2358
Male, age 61, both hemispheres
358.6
2326
Male, age 74, both hemispheres
177.5
2083
Male, age 80, both hemispheres
175.5
1936
Male, age 76, left hemisphere
159.1
Dorsolateral tegmental area nTPM: 204.8
2337
Male, age 61, both hemispheres
375.5
2360
Male, age 74, both hemispheres
180.2
2654
Male, age 80, both hemispheres
163.3
2751
Female, age 85, both hemispheres
155.9
2141
Male, age 76, both hemispheres
149.1
Kolliker-Fuse nucleus nTPM: 195.1
2163
Male, age 80, both hemispheres
218.7
2793
Female, age 91, left hemisphere
198.5
2315
Male, age 76, right hemisphere
168.1
Lateral lemniscal nuclei nTPM: 170.7
2036
Male, age 80, both hemispheres
194.0
2169
Male, age 76, both hemispheres
184.8
2746
Female, age 85, left hemisphere
165.2
2320
Female, age 91, left hemisphere
160.0
2453
Male, age 74, right hemisphere
149.8
Lateral parabrachial nucleus nTPM: 173.4
2792
Male, age 76, both hemispheres
185.5
2013
Male, age 80, both hemispheres
174.4
2790
Male, age 61, both hemispheres
170.0
2139
Female, age 85, right hemisphere
163.6
Lateral vestibular nucleus nTPM: 213.2
2184
Male, age 76, both hemispheres
222.2
2311
Male, age 80, both hemispheres
204.1
Locus coeruleus nTPM: 216.7
2123
Female, age 91, both hemispheres
253.9
2014
Male, age 55, unknown
226.3
1980
Male, age 76, both hemispheres
217.7
2720
Male, age 74, both hemispheres
214.1
2162
Male, age 80, both hemispheres
208.5
2788
Male, age 74, unknown
198.8
2317
Female, age 72, unknown
197.5
Medial parabrachial nucleus nTPM: 174.1
2854
Male, age 80, both hemispheres
209.0
2170
Female, age 91, both hemispheres
195.4
2156
Male, age 61, both hemispheres
181.0
2786
Male, age 76, both hemispheres
163.9
2463
Female, age 85, right hemisphere
121.1
Medial periolivary nuclei nTPM: 175.3
2171
Female, age 85, both hemispheres
193.8
2081
Male, age 80, both hemispheres
180.8
2063
Male, age 76, both hemispheres
176.3
2458
Female, age 91, both hemispheres
164.1
2791
Male, age 74, right hemisphere
161.3
Motor facial nucleus nTPM: 176.9
2697
Female, age 85, both hemispheres
214.9
2365
Male, age 74, right hemisphere
201.4
2062
Male, age 76, both hemispheres
183.1
2327
Male, age 80, both hemispheres
168.8
2126
Male, age 61, both hemispheres
163.6
2795
Female, age 91, both hemispheres
129.5
Motor trigeminal nucleus nTPM: 177.6
2335
Male, age 61, both hemispheres
210.3
2079
Male, age 80, both hemispheres
179.0
2321
Female, age 91, both hemispheres
175.9
2560
Male, age 74, both hemispheres
161.8
2309
Male, age 76, both hemispheres
160.8
Nuclei of the trapezoid body nTPM: 165.9
1983
Male, age 76, both hemispheres
196.5
2735
Female, age 85, both hemispheres
176.7
2166
Male, age 80, both hemispheres
167.8
2159
Male, age 61, both hemispheres
161.5
2368
Female, age 91, both hemispheres
127.2
Nucleus raphe magnus nTPM: 176.8
2172
Female, age 85, both hemispheres
199.0
2051
Male, age 76, both hemispheres
195.0
2455
Male, age 74, both hemispheres
175.2
2328
Male, age 80, both hemispheres
173.2
2160
Male, age 61, both hemispheres
168.0
2459
Female, age 91, both hemispheres
150.4
Paramedian reticular nucleus nTPM: 182.3
2313
Male, age 61, both hemispheres
224.2
2050
Female, age 85, both hemispheres
179.0
2057
Male, age 80, both hemispheres
168.1
2052
Male, age 76, both hemispheres
157.6
Pedunculopontine tegmental nucleus nTPM: 209.1
2338
Male, age 61, both hemispheres
298.8
2334
Male, age 80, both hemispheres
196.9
1921
Female, age 85, both hemispheres
131.5
Pontine nuclei nTPM: 184.8
1863
Male, age 55, unknown
211.1
2109
Female, age 72, unknown
203.5
2115
Male, age 80, left hemisphere
203.0
2787
Female, age 85, both hemispheres
200.0
1968
Male, age 76, left hemisphere
181.7
2454
Male, age 74, left hemisphere
177.4
2319
Female, age 91, both hemispheres
167.3
2727
Male, age 61, right hemisphere
134.2
Pontine raphe nucleus nTPM: 173.5
2853
Male, age 76, midline
175.5
2122
Female, age 85, midline
171.6
Posteroventral cochlear nucleus nTPM: 175.2
2371
Male, age 61, both hemispheres
195.9
2341
Male, age 80, both hemispheres
188.5
2070
Male, age 76, both hemispheres
178.7
2135
Female, age 91, both hemispheres
159.3
2752
Female, age 85, both hemispheres
153.4
Principal sensory trigeminal nucleus nTPM: 179.4
2324
Male, age 76, both hemispheres
225.9
2367
Female, age 91, left hemisphere
174.4
2158
Male, age 61, both hemispheres
166.0
2008
Male, age 80, left hemisphere
151.1
Reticular pontine nucleus, caudal nTPM: 166.3
2092
Male, age 76, both hemispheres
179.4
2332
Male, age 80, right hemisphere
176.0
2559
Male, age 74, both hemispheres
159.0
2457
Female, age 91, both hemispheres
150.6
Reticular pontine nucleus, oral nTPM: 171.8
2361
Male, age 74, both hemispheres
194.2
2167
Male, age 76, both hemispheres
184.7
1939
Male, age 80, both hemispheres
174.5
2366
Female, age 91, both hemispheres
158.1
2012
Female, age 85, both hemispheres
147.8
Reticulotegmental nucleus nTPM: 186.1
2333
Male, age 80, both hemispheres
189.0
2452
Male, age 74, both hemispheres
187.5
2325
Male, age 76, both hemispheres
185.4
2322
Female, age 91, both hemispheres
182.5
Spinal trigeminal nucleus, oral nTPM: 177.2
2164
Male, age 80, both hemispheres
224.9
2737
Female, age 85, both hemispheres
158.4
1978
Male, age 76, both hemispheres
148.3
Subcoeruleus area nTPM: 164.1
2323
Female, age 91, left hemisphere
182.2
2451
Male, age 74, both hemispheres
170.7
1958
Male, age 80, both hemispheres
167.1
2089
Male, age 76, left hemisphere
160.5
2369
Female, age 85, left hemisphere
140.0
Superior olive nTPM: 168.6
2364
Male, age 74, right hemisphere
183.5
2329
Male, age 80, right hemisphere
178.8
2020
Male, age 76, both hemispheres
164.0
2561
Female, age 91, both hemispheres
163.3
1875
Female, age 85, both hemispheres
153.6
Ventral periolivary nuclei nTPM: 170.8
2130
Female, age 85, both hemispheres
190.4
2165
Male, age 80, both hemispheres
181.2
2794
Female, age 91, left hemisphere
160.1
2023
Male, age 76, both hemispheres
151.3
Ventrolateral tegmental area, A5 NE cell group nTPM: 189.2
2359
Male, age 61, both hemispheres
233.1
2840
Female, age 85, both hemispheres
204.8
2161
Male, age 80, both hemispheres
195.2
1959
Male, age 76, both hemispheres
181.2
2449
Male, age 74, both hemispheres
172.8
2456
Female, age 91, both hemispheres
148.2
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
422.6
Pig sample
Sample description
nTPM
Pons nTPM: 422.6
Samples: 4
Max nTPM: 627.5
Min nTPM: 232.4
Sample A
Female
451.6
Sample B
Female
232.4
Sample C
Male
378.9
Sample D
Male
627.5
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
