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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:968.3 nTPM
HPA Brain:234.3 nTPM
GTEx:968.3 nTPM
FANTOM5:57.1 Scaled Tags Per Million
Pig:441.0 nTPM
Mouse:665.7 nTPM
Allen mouse:15.4 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

234.3
Sample id Sample description nTPM
Amygdala
nTPM: 234.3
2695 Female, age 67, right hemisphere 328.9
2514 Male, age 75, right hemisphere 262.2
2517 Female, age 94, left hemisphere 204.6
2814 Male, age 76, right hemisphere 190.7
1987 Female, age 91, left hemisphere 185.3
Basal amygdala
nTPM: 196.8
2827 Female, age 67, right hemisphere 289.0
2609 Male, age 75, right hemisphere 231.5
2110 Male, age 80, left hemisphere 174.2
2685 Female, age 94, left hemisphere 170.0
1955 Male, age 76, both hemispheres 167.9
2243 Female, age 91, right hemisphere 148.1
Central amygdala
nTPM: 213.2
2826 Female, age 94, left hemisphere 360.6
2515 Male, age 75, right hemisphere 212.1
1905 Male, age 76, both hemispheres 173.8
2239 Male, age 80, left hemisphere 161.0
2701 Female, age 91, right hemisphere 158.5
Corticomedial amygdala
nTPM: 173.7
2240 Male, age 76, both hemispheres 224.6
2428 Male, age 75, right hemisphere 204.2
2535 Female, age 67, right hemisphere 193.2
2242 Female, age 91, right hemisphere 144.3
2829 Male, age 80, left hemisphere 144.0
2429 Female, age 94, left hemisphere 131.6
Lateral amygdala
nTPM: 219.4
2830 Female, age 67, right hemisphere 320.1
2516 Male, age 75, right hemisphere 276.9
2534 Female, age 94, left hemisphere 267.7
2256 Male, age 80, left hemisphere 171.2
1883 Male, age 76, both hemispheres 150.5
2255 Female, age 91, right hemisphere 129.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

968.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 968.3
Samples: 152

Max nTPM: 2596.7
Min nTPM: 472.6
Std nTPM: 389.4
Median nTPM: 859.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 2596.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 2451.0
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 2185.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 2158.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 2141.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1914.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1909.1
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 1808.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1781.0
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 1730.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 1705.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 1648.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 1491.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 1467.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 1450.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 1443.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 1404.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 1400.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 1378.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1368.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1358.3
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 1337.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1306.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 1289.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 1279.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 1244.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 1224.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 1212.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 1202.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 1191.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 1188.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1180.5
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 1157.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 1154.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 1152.4
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 1146.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 1132.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 1112.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1107.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 1096.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 1083.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 1069.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 1064.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 1052.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 1037.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 1029.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1016.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 1015.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1014.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 1003.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 996.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 983.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 981.2
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 980.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 965.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 957.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 955.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 946.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 940.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 930.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 918.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 918.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 906.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 897.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 897.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 896.8
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 893.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 891.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 890.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 887.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 880.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 878.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 871.4
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 867.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 866.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 859.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 859.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 851.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 849.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 844.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 832.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 832.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 832.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 831.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 828.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 824.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 820.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 818.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 815.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 813.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 805.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 805.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 805.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 801.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 800.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 800.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 798.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 795.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 777.0
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 774.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 769.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 756.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 751.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 747.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 747.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 744.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 738.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 735.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 731.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 730.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 724.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 717.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 707.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 705.4
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 697.8
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 696.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 696.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 690.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 682.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 681.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 679.8
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 678.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 677.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 676.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 673.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 669.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 664.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 661.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 660.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 646.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 646.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 639.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 635.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 622.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 617.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 616.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 608.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 598.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 598.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 592.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 587.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 583.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 578.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 571.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 568.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 559.4
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 537.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 534.4
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 504.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 499.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 487.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 472.6
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

57.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 57.1
FF:10151-102I7 76 years, female 57.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

441.0
Pig sample Sample description nTPM
Amygdala
nTPM: 441.0
Samples: 4

Max nTPM: 538.6
Min nTPM: 259.2
Sample A Female 506.6
Sample B Female 538.6
Sample C Male 459.5
Sample D Male 259.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

665.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 665.7
Samples: 4

Max nTPM: 689.4
Min nTPM: 631.3
Sample A Male 631.3
Sample B Male 678.7
Sample C Female 689.4
Sample D Female 663.3

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

15.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 15.4
199144 Antisense, RP_040609_01_B11, Mouse strain C57BL/6J (56 days, male) 15.4
276067 Antisense, RP_040609_01_B11, Mouse strain C57BL/6J (56 days, male) 13.3

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