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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
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Retina
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:375.0 nTPM
GTEx:375.0 nTPM
FANTOM5:134.8 Scaled Tags Per Million
Pig:210.8 nTPM
Mouse:935.5 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

375.0
GTEx sample id Sample description nTPM
Retina
Average nTPM: 375.0
Samples: 105

Max nTPM: 585.8
Min nTPM: 144.8
Std nTPM: 81.3
Median nTPM:
379_1 60 years, male 585.8
384_1 83 years, male 566.5
4_1 88 years, female 521.3
218_1 71 years, female 520.6
452_1 88 years, female 518.5
189_1 76 years, male 513.1
389_1 86 years, female 505.0
35_1 74 years, female 498.2
237_1 82 years, male 484.5
120_1 70 years, female 463.4
2_1 77 years, female 463.3
447_1 81 years, male 461.7
145_1 84 years, male 456.5
153_1 70 years, female 454.6
265_1 87 years, male 454.1
321_1 62 years, female 451.0
394_1 75 years, female 450.7
376_1 75 years, female 447.5
264_1 73 years, female 447.1
17_1 71 years, male 441.4
246_1 77 years, male 437.8
173_1 67 years, male 434.1
375_1 74 years, female 432.4
286_1 68 years, female 431.0
396_1 62 years, male 430.9
386_1 76 years, male 428.8
243_1 75 years, male 427.2
354_1 81 years, female 425.5
137_1 83 years, male 423.9
295_1 61 years, female 422.3
322_1 76 years, male 422.0
377_1 82 years, female 416.9
355_1 70 years, female 414.2
126_1 63 years, male 413.8
254_1 77 years, female 412.7
348_1 84 years, male 409.7
526_1 61 years, male 407.3
6_1 73 years, female 406.9
319_1 81 years, male 405.6
315_1 62 years, female 404.5
163_1 78 years, male 403.9
177_1 74 years, male 401.9
404_1 82 years, female 401.1
172_1 72 years, female 395.2
229_1 69 years, female 394.4
307_1 66 years, female 387.4
349_1 83 years, male 387.0
425_1 59 years, female 387.0
347_1 72 years, male 383.1
314_1 67 years, male 382.4
316_1 62 years, male 382.4
503_1 68 years, male 381.8
405_1 91 years, male 381.4
351_1 91 years, male 381.1
320_1 89 years, female 378.4
311_1 78 years, male 371.9
350_1 84 years, female 369.4
317_1 60 years, male 368.0
41_1 94 years, female 366.8
115_1 83 years, male 365.5
406_1 79 years, male 362.0
18_1 88 years, male 356.3
217_1 76 years, male 355.8
288_1 66 years, female 355.2
308_1 70 years, female 353.2
109_1 81 years, female 352.7
42_1 85 years, male 351.9
139_1 64 years, female 350.1
353_1 82 years, female 350.1
495_1 57 years, female 348.7
99_1 64 years, male 346.2
117_1 61 years, male 345.9
251_1 78 years, male 341.3
468_1 89 years, male 338.6
335_1 73 years, female 336.7
119_1 70 years, female 335.7
352_1 62 years, male 334.4
499_1 55 years, female 326.1
291_1 76 years, male 325.2
480_1 63 years, male 324.9
506_1 65 years, male 323.6
518_1 75 years, female 318.6
517_1 88 years, male 317.3
356_1 87 years, female 316.7
142_1 61 years, female 311.3
318_1 68 years, male 309.4
266_1 85 years, male 303.5
162_1 79 years, female 303.2
293_1 68 years, female 302.6
32_1 67 years, male 298.2
313_1 79 years, female 295.8
324_1 76 years, male 294.9
9_1 66 years, female 291.4
414_1 84 years, female 277.4
81_1 67 years, male 272.9
292_1 71 years, male 261.5
501_1 88 years, male 259.9
415_1 77 years, female 250.4
89_1 63 years, male 245.5
43_1 64 years, female 241.8
466_1 57 years, female 240.5
149_1 88 years, male 187.6
491_1 89 years, female 184.9
413_1 59 years, female 151.5
490_1 67 years, female 144.8
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

134.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 134.8
FF:10030-101E3 24-65 years, mixed 134.8

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

210.8
Pig sample Sample description nTPM
Retina
nTPM: 210.8
Samples: 4

Max nTPM: 245.2
Min nTPM: 185.1
Sample A Female 205.0
Sample B Female 208.0
Sample C Male 245.2
Sample D Male 185.1

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

935.5
Mouse sample Sample description nTPM
Retina
nTPM: 935.5
Samples: 4

Max nTPM: 1018.8
Min nTPM: 752.4
Sample A Male 954.6
Sample B Male 752.4
Sample C Female 1016.2
Sample D Female 1018.8

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