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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1369.9 nTPM
HPA Brain:316.9 nTPM
GTEx:1369.9 nTPM
FANTOM5:127.4 Scaled Tags Per Million
Pig:826.8 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

316.9
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 254.4
1981 Female, age 72, midline 320.9
2565 Male, age 75, midline 306.1
2048 Male, age 55, midline 275.7
2816 Male, age 47, midline 188.3
2194 Female, age 79, both hemispheres 180.7
Cervical spinal cord, dorsal horn
nTPM: 259.5
2069 Male, age 47, both hemispheres 340.6
2173 Female, age 72, unknown 337.8
1877 Male, age 55, unknown 278.4
2296 Male, age 66, both hemispheres 269.9
2721 Male, age 90, both hemispheres 178.5
2297 Male, age 75, both hemispheres 151.6
Cervical spinal cord, ventral horn
nTPM: 316.9
2809 Male, age 90, both hemispheres 423.7
2480 Male, age 75, both hemispheres 384.2
2098 Female, age 72, unknown 371.8
2295 Male, age 66, both hemispheres 289.2
2068 Male, age 55, unknown 270.7
2820 Female, age 79, both hemispheres 161.6

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1369.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 1369.9
Samples: 159

Max nTPM: 2539.4
Min nTPM: 553.3
Std nTPM: 415.0
Median nTPM: 1305.1
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 2539.4
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 2480.2
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 2354.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 2328.9
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 2300.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 2224.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 2222.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 2203.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 2188.9
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 2164.6
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 2112.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 2111.7
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 2108.3
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 1985.4
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 1970.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 1954.2
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 1950.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 1946.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 1941.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 1905.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 1890.8
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 1884.0
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 1863.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 1841.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 1814.8
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 1810.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 1791.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 1774.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 1758.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 1730.8
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 1711.7
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 1705.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 1691.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 1691.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 1667.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 1661.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 1660.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 1656.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 1652.6
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 1645.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 1635.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 1633.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 1626.3
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 1579.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 1573.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 1560.6
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 1556.8
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 1549.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 1544.9
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 1503.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 1498.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 1489.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 1479.9
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 1477.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 1458.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 1437.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 1436.1
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 1434.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 1427.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 1425.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 1424.4
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 1413.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 1407.4
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 1397.1
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 1393.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 1386.9
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 1379.1
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 1374.5
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 1370.0
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 1369.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 1367.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 1359.4
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 1358.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 1357.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 1352.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 1341.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 1325.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 1325.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 1310.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 1305.1
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 1305.0
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 1288.4
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 1287.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 1287.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 1283.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 1280.8
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 1273.7
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 1268.6
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 1266.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 1263.8
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 1256.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 1254.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 1252.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 1228.3
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 1216.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 1215.6
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 1211.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 1210.9
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 1189.4
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 1188.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 1173.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 1170.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 1169.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 1164.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 1161.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 1132.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 1129.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 1128.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 1119.8
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 1100.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 1096.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 1095.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 1085.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 1077.7
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 1077.5
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 1077.2
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 1076.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 1074.7
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 1072.3
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 1068.0
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 1056.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 1048.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 1045.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 1040.2
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 1039.8
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 1039.4
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 1032.9
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 1016.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 1015.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 1008.6
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 1002.8
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 1001.8
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 982.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 981.3
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 972.4
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 969.9
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 952.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 947.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 930.7
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 928.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 912.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 898.9
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 889.5
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 885.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 881.7
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 869.1
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 838.1
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 836.1
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 832.3
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 824.1
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 812.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 799.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 782.5
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 774.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 747.4
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 627.7
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 614.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 593.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 553.3
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

127.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 127.4
FF:10181-103D1 60 years, female 145.2
FF:10159-103A6 76 years, female 109.5

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

826.8
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 826.9
Samples: 4

Max nTPM: 1156.7
Min nTPM: 599.7
Sample A Female 599.7
Sample B Female 921.7
Sample C Male 1156.7
Sample D Male 629.3
Ventral spinal cord
nTPM: 725.0
Samples: 4

Max nTPM: 842.8
Min nTPM: 578.3
Sample A Female 578.3
Sample B Female 777.2
Sample C Male 842.8
Sample D Male 701.6

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