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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:2024.6 nTPM
GTEx:2024.6 nTPM
FANTOM5:408.8 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA002734
Squamous epithelial cells Low



VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2024.6
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 2024.6
Samples: 156

Max nTPM: 4580.7
Min nTPM: 1221.1
Std nTPM: 491.1
Median nTPM: 1977.9
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 4580.7
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 4328.6
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 3338.2
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 3103.1
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 3048.2
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 2968.1
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 2846.1
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 2795.9
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 2788.3
GTEX-16NPV-2526-SM-6M483 50-59 years, female 2759.7
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 2723.6
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 2698.5
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 2645.4
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 2617.2
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 2611.4
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 2588.6
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 2527.6
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 2517.8
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 2509.0
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 2500.6
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 2472.9
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 2452.0
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 2447.6
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 2431.4
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 2425.5
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 2406.1
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 2390.7
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 2390.3
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 2361.6
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 2357.1
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 2332.7
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 2307.0
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 2301.6
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 2299.0
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 2292.1
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 2264.2
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 2262.4
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 2243.5
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 2239.7
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 2234.9
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 2225.0
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 2223.1
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 2215.7
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 2213.7
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 2203.2
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 2202.1
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 2185.9
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 2178.7
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 2176.5
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 2172.6
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 2162.1
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 2151.6
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 2141.0
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 2138.3
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 2136.5
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 2132.1
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 2123.1
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 2121.5
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 2121.0
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 2119.3
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 2117.4
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 2107.4
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 2106.1
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 2099.0
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 2094.1
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 2093.5
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 2080.9
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 2068.9
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 2059.8
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 2054.9
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 2024.5
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 2022.3
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 2010.9
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 2007.2
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 1999.7
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 1985.7
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 1982.1
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 1980.6
GTEX-S341-1226-SM-4AD5S 40-49 years, female 1975.2
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 1966.8
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 1941.9
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 1925.1
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 1923.2
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 1920.2
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 1917.4
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 1915.7
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 1915.1
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 1914.8
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 1911.8
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 1899.0
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 1894.5
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 1854.9
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 1852.5
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 1848.1
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 1844.4
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 1837.3
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 1834.6
GTEX-14PKU-1326-SM-6871B 40-49 years, female 1831.1
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 1830.1
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 1829.4
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 1821.7
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 1774.9
GTEX-11I78-2026-SM-5987C 50-59 years, female 1772.6
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 1769.4
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 1764.0
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 1759.3
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 1738.2
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 1734.6
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 1731.1
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 1727.7
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 1723.7
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 1717.0
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 1697.2
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 1694.8
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 1694.3
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 1681.7
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 1679.8
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 1654.6
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 1651.2
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 1641.8
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 1641.4
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 1638.6
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 1630.4
GTEX-QCQG-1226-SM-48U23 50-59 years, female 1629.6
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 1626.0
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 1618.0
GTEX-1C475-0526-SM-793AC 40-49 years, female 1614.0
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 1613.5
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 1612.4
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 1594.5
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 1591.1
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 1589.0
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 1586.6
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 1581.6
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 1568.6
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 1565.5
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 1562.0
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 1558.4
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 1557.8
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 1515.0
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 1513.0
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 1512.1
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 1491.9
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 1491.3
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 1480.2
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 1467.7
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 1458.8
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 1446.6
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 1440.1
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 1361.4
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 1346.9
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 1311.1
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 1267.5
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 1248.4
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 1223.9
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 1221.1
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

408.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 408.8
FF:10204-103F6 68 years, female 408.8

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