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TISSUE SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1364.2 nTPM
HPA:1044.5 nTPM
GTEx:1364.2 nTPM
FANTOM5:11.3 Scaled Tags Per Million

SMALL INTESTINE - Annotated protein expression
Pending normal tissue analysis

SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1044.5
overview
Male, age 65
Small intestine sample 232
nTPM: 1409.2
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 940.5
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 959.8
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 868.6

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1364.2
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 1364.2
Samples: 187

Max nTPM: 3097.7
Min nTPM: 504.4
Std nTPM: 471.0
Median nTPM: 1268.9
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 3097.7
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 2995.3
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 2759.9
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 2699.5
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 2668.4
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 2643.5
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 2520.4
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 2466.1
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 2287.0
GTEX-183FY-1626-SM-793D8 20-29 years, male 2244.9
GTEX-14PK6-1626-SM-6871I 70-79 years, female 2216.4
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 2208.0
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 2135.8
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 2115.7
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 2110.1
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 2096.4
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 2079.5
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 2054.6
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 2006.1
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 2003.1
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 1975.4
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 1951.8
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 1929.1
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 1886.5
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 1877.1
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 1839.2
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 1839.0
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 1834.7
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 1811.6
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 1811.6
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 1744.3
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 1711.0
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 1703.5
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 1691.8
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 1681.7
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 1677.3
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 1666.7
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 1664.9
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 1634.1
GTEX-1192X-2526-SM-59868 50-59 years, male 1630.3
GTEX-1C475-1426-SM-793CH 40-49 years, female 1615.7
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 1609.8
GTEX-14PKU-1626-SM-6871C 40-49 years, female 1606.6
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 1596.7
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 1595.5
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 1595.1
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 1594.0
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 1588.7
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 1560.8
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 1547.3
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 1544.7
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 1537.3
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 1534.9
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 1533.4
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 1528.9
GTEX-13O61-1326-SM-5KM31 60-69 years, male 1523.0
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 1522.9
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 1521.2
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 1512.9
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 1511.8
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 1505.8
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 1500.8
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 1498.0
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 1492.7
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 1485.3
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 1484.1
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 1481.3
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 1480.1
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 1479.7
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 1458.4
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 1439.3
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 1433.7
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 1432.2
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 1427.7
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 1424.6
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 1422.7
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 1381.2
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 1377.4
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 1364.9
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 1361.7
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 1356.5
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 1351.5
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 1342.2
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 1340.4
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 1330.7
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 1325.2
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 1315.0
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 1314.6
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 1310.3
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 1293.5
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 1281.7
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 1279.5
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 1276.8
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 1268.9
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 1251.4
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 1251.1
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 1248.0
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 1236.5
GTEX-117YX-0326-SM-5GICL 50-59 years, male 1234.1
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 1230.4
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 1220.4
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 1211.2
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 1208.7
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 1199.4
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 1196.4
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 1188.5
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 1187.8
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 1187.6
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 1181.7
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 1180.7
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 1180.7
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 1165.5
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 1164.6
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 1155.6
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 1155.0
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 1150.0
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 1149.2
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 1143.1
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 1139.9
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 1135.9
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 1131.3
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 1128.3
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 1113.3
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 1105.6
GTEX-13113-1226-SM-5EGHT 60-69 years, female 1103.8
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 1094.2
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 1089.9
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 1085.0
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 1079.5
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 1078.6
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 1074.5
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 1068.1
GTEX-13111-1426-SM-5DUW3 50-59 years, male 1065.3
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 1063.3
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 1059.8
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 1050.8
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 1050.2
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 1048.8
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 1042.1
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 1036.9
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 1029.3
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 1026.1
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 1023.4
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 1020.6
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 1013.4
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 984.2
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 983.8
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 979.2
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 977.8
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 976.3
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 975.6
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 973.2
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 973.0
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 972.2
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 970.6
GTEX-144GM-1026-SM-79OKU 20-29 years, male 966.4
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 955.2
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 944.7
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 943.8
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 936.0
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 926.1
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 923.4
GTEX-14PN3-2026-SM-68729 60-69 years, female 923.1
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 903.8
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 886.2
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 881.5
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 879.7
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 872.2
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 865.4
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 849.5
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 837.7
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 833.9
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 823.0
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 820.2
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 817.9
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 805.7
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 771.9
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 765.3
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 762.5
GTEX-YFCO-1326-SM-664NV 40-49 years, male 756.4
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 748.3
GTEX-1122O-1326-SM-5H11F 60-69 years, female 727.7
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 696.9
GTEX-111YS-1426-SM-5GID8 60-69 years, male 665.6
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 631.9
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 613.4
GTEX-ZTSS-0926-SM-59865 40-49 years, male 504.4
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

11.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 11.3
FF:10024-101D6 15,40,85 years, mixed 11.3

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