We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
CALM2
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • CALM2
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:1105.5 nTPM
FANTOM5:1046.3 Scaled Tags Per Million
Pig:1152.4 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA044999Antibody CAB007790
Glial cells Not detectedHigh
Neuronal cells MediumHigh




CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1105.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 1105.5
Samples: 246

Max nTPM: 2870.0
Min nTPM: 529.4
Std nTPM: 392.0
Median nTPM: 1008.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 2870.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 2685.1
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 2479.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 2139.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 2087.9
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 2075.7
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 2023.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 1938.7
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 1919.9
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 1917.6
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 1914.4
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 1880.3
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 1842.9
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 1804.2
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 1794.0
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 1788.0
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 1712.5
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 1711.9
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 1691.6
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 1679.4
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 1678.7
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 1671.5
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 1663.7
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 1643.2
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 1642.3
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 1609.3
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 1598.5
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 1591.5
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 1584.4
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 1583.0
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 1570.5
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 1561.3
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 1558.1
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 1547.1
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 1531.2
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 1474.9
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 1468.3
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 1455.3
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 1453.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 1449.5
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 1440.3
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 1439.1
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 1437.6
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 1422.6
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 1419.3
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 1414.7
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 1412.8
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 1407.3
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 1400.7
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 1395.5
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 1393.4
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 1385.1
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 1375.3
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 1370.7
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 1366.8
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 1363.2
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 1359.8
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 1354.4
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 1344.6
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 1341.3
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 1332.9
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 1326.9
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 1316.7
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 1316.1
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 1316.0
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 1307.7
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 1306.0
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 1301.7
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 1297.0
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 1294.9
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 1293.3
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 1288.4
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 1285.7
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 1265.2
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 1247.7
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 1240.9
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 1240.4
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 1238.5
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 1237.0
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 1236.0
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 1234.7
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 1227.2
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 1226.5
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 1222.9
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 1206.2
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 1203.7
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 1182.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 1177.7
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 1158.8
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 1157.6
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 1151.3
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 1148.4
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 1139.8
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 1138.9
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 1134.2
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 1132.3
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 1132.1
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 1127.8
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 1125.6
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 1116.7
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 1109.5
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 1106.5
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 1103.6
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 1102.0
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 1099.6
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 1096.8
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 1095.6
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 1090.0
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 1087.6
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 1084.1
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 1079.9
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 1075.9
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 1072.1
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 1059.0
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 1058.8
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 1056.7
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 1046.6
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 1021.6
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 1020.3
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 1016.2
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 1014.2
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 1012.6
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 1008.4
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 1007.7
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 1006.2
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 1005.8
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 1005.3
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 1001.2
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 997.9
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 997.5
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 994.5
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 989.4
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 981.5
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 981.4
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 976.7
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 973.8
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 973.6
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 970.2
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 968.0
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 967.5
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 964.0
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 962.6
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 952.3
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 948.8
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 946.4
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 940.0
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 937.9
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 937.0
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 932.5
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 926.1
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 925.2
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 923.1
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 921.1
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 918.7
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 914.2
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 914.1
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 911.0
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 904.3
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 903.8
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 898.7
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 898.5
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 895.9
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 889.8
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 889.0
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 885.3
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 885.1
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 877.9
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 877.6
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 876.3
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 875.0
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 873.9
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 866.6
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 863.4
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 862.9
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 853.9
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 853.7
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 852.7
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 851.5
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 847.3
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 843.8
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 841.3
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 834.5
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 831.9
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 824.2
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 819.6
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 814.8
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 809.9
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 803.0
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 792.7
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 790.7
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 789.3
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 785.7
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 783.9
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 778.2
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 777.2
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 763.2
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 759.6
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 757.3
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 756.3
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 747.3
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 746.9
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 743.1
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 735.2
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 735.1
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 734.2
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 729.3
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 729.1
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 717.1
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 716.4
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 716.4
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 714.4
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 711.8
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 710.9
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 706.4
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 703.2
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 696.6
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 693.9
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 692.7
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 685.1
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 684.9
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 680.6
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 676.1
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 675.9
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 674.1
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 673.4
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 667.6
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 661.5
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 656.8
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 653.2
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 650.7
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 644.9
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 644.7
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 644.4
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 637.1
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 623.8
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 620.3
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 616.1
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 613.6
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 608.4
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 593.7
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 593.4
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 580.2
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 574.9
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 561.2
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 551.8
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 529.4
Show allShow less

CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1046.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 1046.3
FF:10164-103B2 76 years, female 1046.3

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1152.4
Pig sample Sample description nTPM
Caudate
nTPM: 1152.4
Samples: 4

Max nTPM: 1277.9
Min nTPM: 1061.3
Sample A Female 1159.6
Sample B Female 1061.3
Sample C Male 1277.9
Sample D Male 1110.7

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org