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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:603.2 nTPM
HPA:603.2 nTPM
GTEx:478.0 nTPM
FANTOM5:765.4 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA044999Antibody CAB007790
Glandular cells HighHigh




SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

603.2
overview
Male, age 65
Small intestine sample 232
nTPM: 501.9
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 643.2
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 597.9
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 669.9

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

478.0
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 478.0
Samples: 187

Max nTPM: 826.2
Min nTPM: 221.8
Std nTPM: 138.6
Median nTPM: 464.1
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 826.2
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 784.9
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 779.0
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 765.3
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 748.4
GTEX-YFCO-1326-SM-664NV 40-49 years, male 747.2
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 746.7
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 746.4
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 745.6
GTEX-111YS-1426-SM-5GID8 60-69 years, male 732.3
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 730.4
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 726.4
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 715.6
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 696.9
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 693.9
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 690.8
GTEX-1122O-1326-SM-5H11F 60-69 years, female 689.5
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 681.0
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 675.4
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 674.6
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 673.7
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 654.3
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 650.8
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 650.4
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 650.2
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 650.2
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 647.1
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 641.7
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 641.6
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 631.5
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 626.9
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 624.2
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 623.0
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 613.3
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 607.3
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 603.5
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 598.5
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 595.9
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 595.3
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 594.7
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 593.9
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 586.9
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 586.1
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 585.2
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 580.8
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 578.9
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 573.1
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 570.0
GTEX-117YX-0326-SM-5GICL 50-59 years, male 569.7
GTEX-144GM-1026-SM-79OKU 20-29 years, male 566.1
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 565.4
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 563.2
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 562.6
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 561.2
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 560.4
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 559.3
GTEX-1192X-2526-SM-59868 50-59 years, male 557.9
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 554.9
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 552.8
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 552.2
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 550.3
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 549.1
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 542.7
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 538.3
GTEX-ZTSS-0926-SM-59865 40-49 years, male 537.6
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 532.3
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 528.2
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 527.3
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 522.3
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 521.7
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 516.9
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 512.9
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 509.1
GTEX-13113-1226-SM-5EGHT 60-69 years, female 509.0
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 507.9
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 506.8
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 502.9
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 497.1
GTEX-14PN3-2026-SM-68729 60-69 years, female 489.7
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 489.2
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 488.4
GTEX-13111-1426-SM-5DUW3 50-59 years, male 487.5
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 483.8
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 481.1
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 479.6
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 478.6
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 477.4
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 475.0
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 473.4
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 472.2
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 469.9
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 467.7
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 466.8
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 464.1
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 463.8
GTEX-14PKU-1626-SM-6871C 40-49 years, female 460.0
GTEX-14PK6-1626-SM-6871I 70-79 years, female 458.5
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 458.4
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 457.7
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 455.8
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 447.8
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 445.2
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 444.9
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 443.5
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 443.0
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 442.5
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 442.4
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 441.0
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 439.0
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 435.1
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 431.0
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 430.4
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 429.2
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 428.3
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 424.0
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 423.2
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 421.8
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 418.9
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 418.2
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 414.0
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 411.9
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 411.6
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 404.0
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 403.9
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 403.9
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 402.9
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 402.8
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 399.7
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 398.6
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 398.0
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 396.5
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 393.4
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 390.2
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 389.0
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 384.6
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 382.9
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 374.9
GTEX-1C475-1426-SM-793CH 40-49 years, female 372.5
GTEX-13O61-1326-SM-5KM31 60-69 years, male 369.9
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 369.8
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 369.4
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 369.3
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 368.6
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 366.3
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 366.2
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 361.8
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 361.7
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 355.9
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 354.9
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 350.3
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 347.0
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 343.5
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 340.0
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 332.2
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 329.0
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 328.4
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 328.1
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 326.9
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 326.9
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 317.9
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 315.8
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 315.1
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 314.8
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 314.4
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 313.9
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 310.8
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 309.8
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 302.9
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 300.9
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 300.4
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 300.3
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 286.0
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 280.9
GTEX-183FY-1626-SM-793D8 20-29 years, male 280.2
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 279.6
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 278.2
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 272.5
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 269.2
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 265.9
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 265.3
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 255.4
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 250.6
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 246.8
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 237.1
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 236.9
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 233.8
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 221.8
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

765.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 765.4
FF:10024-101D6 15,40,85 years, mixed 765.4

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