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TISSUE PRIMARY DATA RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
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Tissue proteome
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Retina
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:557.0 nTPM
GTEx:557.0 nTPM
FANTOM5:285.9 Scaled Tags Per Million
Pig:331.2 nTPM
Mouse:1098.7 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

557.0
GTEx sample id Sample description nTPM
Retina
Average nTPM: 557.0
Samples: 105

Max nTPM: 1063.2
Min nTPM: 318.4
Std nTPM: 133.4
Median nTPM:
413_1 59 years, female 1063.2
162_1 79 years, female 898.0
501_1 88 years, male 883.1
142_1 61 years, female 855.2
491_1 89 years, female 844.5
149_1 88 years, male 830.8
414_1 84 years, female 780.5
490_1 67 years, female 777.3
109_1 81 years, female 743.0
415_1 77 years, female 730.3
466_1 57 years, female 721.7
120_1 70 years, female 720.5
126_1 63 years, male 715.5
81_1 67 years, male 708.8
315_1 62 years, female 705.7
32_1 67 years, male 695.6
153_1 70 years, female 693.9
43_1 64 years, female 685.9
89_1 63 years, male 674.9
18_1 88 years, male 666.5
42_1 85 years, male 665.3
17_1 71 years, male 659.1
145_1 84 years, male 656.9
4_1 88 years, female 655.1
99_1 64 years, male 654.1
117_1 61 years, male 649.9
313_1 79 years, female 626.7
119_1 70 years, female 624.4
35_1 74 years, female 622.2
115_1 83 years, male 617.9
324_1 76 years, male 616.5
518_1 75 years, female 611.7
288_1 66 years, female 611.6
9_1 66 years, female 607.5
396_1 62 years, male 600.8
139_1 64 years, female 584.3
377_1 82 years, female 582.5
137_1 83 years, male 582.4
217_1 76 years, male 572.4
266_1 85 years, male 570.3
189_1 76 years, male 564.2
468_1 89 years, male 555.4
314_1 67 years, male 554.5
404_1 82 years, female 552.0
526_1 61 years, male 550.5
379_1 60 years, male 547.4
229_1 69 years, female 546.4
265_1 87 years, male 546.1
499_1 55 years, female 545.8
506_1 65 years, male 545.8
246_1 77 years, male 545.4
254_1 77 years, female 540.3
243_1 75 years, male 535.4
375_1 74 years, female 533.5
2_1 77 years, female 529.5
376_1 75 years, female 528.8
452_1 88 years, female 522.3
503_1 68 years, male 519.1
320_1 89 years, female 516.5
319_1 81 years, male 508.6
6_1 73 years, female 503.7
251_1 78 years, male 500.5
389_1 86 years, female 498.5
335_1 73 years, female 496.6
517_1 88 years, male 493.2
480_1 63 years, male 491.8
291_1 76 years, male 489.7
321_1 62 years, female 488.5
394_1 75 years, female 486.6
316_1 62 years, male 485.5
495_1 57 years, female 481.4
292_1 71 years, male 480.0
386_1 76 years, male 476.9
173_1 67 years, male 476.6
237_1 82 years, male 473.3
348_1 84 years, male 465.5
347_1 72 years, male 463.0
447_1 81 years, male 462.0
264_1 73 years, female 459.1
311_1 78 years, male 458.9
286_1 68 years, female 456.6
354_1 81 years, female 451.8
405_1 91 years, male 451.7
308_1 70 years, female 448.7
425_1 59 years, female 443.4
406_1 79 years, male 442.3
349_1 83 years, male 438.7
177_1 74 years, male 435.0
356_1 87 years, female 427.7
322_1 76 years, male 425.1
295_1 61 years, female 424.0
351_1 91 years, male 420.8
293_1 68 years, female 413.1
172_1 72 years, female 412.7
318_1 68 years, male 411.4
352_1 62 years, male 411.2
355_1 70 years, female 405.0
317_1 60 years, male 403.9
384_1 83 years, male 395.1
350_1 84 years, female 390.8
41_1 94 years, female 387.7
353_1 82 years, female 387.4
307_1 66 years, female 380.2
163_1 78 years, male 318.9
218_1 71 years, female 318.4
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

285.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 285.9
FF:10030-101E3 24-65 years, mixed 285.9

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

331.2
Pig sample Sample description nTPM
Retina
nTPM: 331.2
Samples: 4

Max nTPM: 353.4
Min nTPM: 305.3
Sample A Female 329.9
Sample B Female 353.4
Sample C Male 336.2
Sample D Male 305.3

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1098.7
Mouse sample Sample description nTPM
Retina
nTPM: 1098.7
Samples: 4

Max nTPM: 1168.8
Min nTPM: 1068.8
Sample A Male 1168.8
Sample B Male 1087.9
Sample C Female 1069.3
Sample D Female 1068.8

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