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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:329.3 nTPM
GTEx:329.3 nTPM
FANTOM5:307.3 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA044999Antibody CAB007790
Squamous epithelial cells MediumLow



VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

329.3
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 329.3
Samples: 156

Max nTPM: 842.5
Min nTPM: 181.4
Std nTPM: 92.1
Median nTPM: 303.0
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 842.5
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 659.1
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 547.0
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 542.7
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 539.6
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 536.1
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 520.2
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 514.6
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 497.3
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 496.1
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 492.1
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 479.2
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 461.3
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 460.8
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 458.8
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 445.7
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 445.5
GTEX-QCQG-1226-SM-48U23 50-59 years, female 437.6
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 436.4
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 431.8
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 425.0
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 420.5
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 413.8
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 409.7
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 406.0
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 403.4
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 402.4
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 399.2
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 396.0
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 395.5
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 394.9
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 391.9
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 388.2
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 381.9
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 381.8
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 381.3
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 374.0
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 372.0
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 370.2
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 368.2
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 367.2
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 363.0
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 361.3
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 357.4
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 356.6
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 355.7
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 354.9
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 353.1
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 352.9
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 347.8
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 341.4
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 341.2
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 338.6
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 338.1
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 338.0
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 336.7
GTEX-16NPV-2526-SM-6M483 50-59 years, female 334.6
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 333.6
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 331.9
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 328.5
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 326.6
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 326.0
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 325.8
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 323.2
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 322.8
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 322.1
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 319.1
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 314.8
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 314.3
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 314.2
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 312.9
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 312.8
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 310.9
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 309.7
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 309.5
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 307.9
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 304.1
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 303.1
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 303.0
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 302.1
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 300.2
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 299.1
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 297.6
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 297.3
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 296.6
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 296.0
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 295.2
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 294.9
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 294.4
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 293.2
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 292.8
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 291.2
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 291.0
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 290.0
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 288.7
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 285.0
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 283.7
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 282.6
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 282.3
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 282.2
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 281.7
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 281.5
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 280.9
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 280.7
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 280.5
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 279.5
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 279.4
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 278.0
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 276.7
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 276.2
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 276.2
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 274.9
GTEX-11I78-2026-SM-5987C 50-59 years, female 271.5
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 271.5
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 271.2
GTEX-1C475-0526-SM-793AC 40-49 years, female 270.8
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 270.6
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 265.9
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 263.8
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 263.7
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 263.5
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 262.7
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 262.7
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 262.4
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 260.2
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 259.9
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 259.3
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 259.3
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 259.0
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 258.8
GTEX-14PKU-1326-SM-6871B 40-49 years, female 257.6
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 257.4
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 257.1
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 256.3
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 254.7
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 254.3
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 253.8
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 252.6
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 249.3
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 248.4
GTEX-S341-1226-SM-4AD5S 40-49 years, female 246.1
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 238.7
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 237.6
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 237.1
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 235.5
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 233.8
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 230.6
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 230.0
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 227.4
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 227.3
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 215.9
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 215.4
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 214.1
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 202.9
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 184.8
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 181.4
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

307.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 307.3
FF:10204-103F6 68 years, female 307.3

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