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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:133.5 nTPM
FANTOM5:153.8 Scaled Tags Per Million
Pig:77.4 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA001523Antibody CAB002775Antibody CAB072816
Glial cells MediumLowMedium
Neuronal cells MediumLowMedium






CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

133.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 133.5
Samples: 246

Max nTPM: 780.8
Min nTPM: 67.9
Std nTPM: 89.0
Median nTPM: 110.2
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 780.8
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 747.3
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 704.1
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 534.9
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 462.7
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 386.0
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 328.0
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 318.7
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 293.2
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 288.0
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 283.6
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 279.1
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 274.6
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 271.7
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 262.2
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 249.8
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 231.8
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 229.7
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 220.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 210.4
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 209.6
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 198.6
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 193.3
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 191.7
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 191.4
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 188.6
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 178.4
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 173.0
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 167.6
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 167.3
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 162.6
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 162.2
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 159.8
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 156.1
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 152.8
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 151.7
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 151.1
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 149.9
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 148.8
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 147.8
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 144.2
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 144.1
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 143.4
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 142.8
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 142.7
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 141.4
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 141.4
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 139.7
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 137.9
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 134.8
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 134.5
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 134.4
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 133.9
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 133.5
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 133.1
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 132.9
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 131.6
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 131.2
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 131.0
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 130.8
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 130.7
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 130.3
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 130.0
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 129.7
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 129.3
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 129.0
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 128.2
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 127.5
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 127.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 126.8
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 126.7
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 125.8
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 125.6
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 125.4
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 125.1
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 123.6
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 123.1
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 121.7
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 121.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 121.1
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 120.6
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 120.5
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 120.1
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 120.1
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 119.8
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 119.8
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 119.5
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 119.2
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 118.8
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 118.7
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 118.4
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 118.3
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 118.3
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 118.1
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 118.1
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 118.1
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 117.7
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 117.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 117.3
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 117.3
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 117.1
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 116.6
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 115.7
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 114.9
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 114.8
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 114.7
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 114.2
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 113.9
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 112.8
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 112.1
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 112.0
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 111.9
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 111.5
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 111.5
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 111.5
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 111.1
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 111.1
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 110.8
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 110.7
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 110.6
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 110.4
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 110.3
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 110.2
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 110.2
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 110.1
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 109.9
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 109.6
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 109.5
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 109.5
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 109.2
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 108.7
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 108.7
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 108.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 108.3
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 107.9
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 107.8
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 107.6
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 107.4
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 107.3
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 106.7
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 106.2
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 106.1
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 106.1
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 106.0
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 105.8
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 104.9
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 104.6
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 104.4
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 104.1
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 103.9
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 103.7
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 103.6
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 103.6
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 103.4
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 103.1
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 102.8
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 102.7
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 102.4
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 101.9
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 101.9
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 101.7
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 101.7
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 101.6
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 101.5
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 101.3
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 101.0
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 100.6
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 100.6
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 100.3
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 100.2
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 99.7
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 99.5
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 99.3
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 99.0
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 99.0
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 98.6
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 98.5
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 98.3
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 98.2
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 98.0
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 97.6
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 97.5
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 97.0
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 96.8
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 96.7
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 96.7
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 96.4
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 96.2
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 96.1
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 96.1
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 95.8
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 95.8
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 95.6
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 95.6
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 95.5
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 95.5
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 95.4
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 95.1
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 95.0
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 94.7
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 94.1
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 93.9
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 93.6
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 93.4
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 93.3
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 93.3
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 93.2
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 93.1
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 92.1
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 91.9
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 91.9
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 91.8
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 91.3
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 91.2
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 91.1
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 91.1
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 90.8
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 90.5
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 90.5
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 89.2
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 89.2
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 88.8
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 87.7
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 87.3
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 87.2
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 87.1
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 86.9
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 86.7
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 86.5
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 85.4
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 84.6
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 84.6
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 84.4
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 83.1
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 82.9
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 82.8
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 82.6
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 82.4
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 81.5
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 81.5
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 81.2
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 79.8
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 79.8
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 72.9
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 72.5
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 67.9
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

153.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 153.8
FF:10164-103B2 76 years, female 153.8

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

77.4
Pig sample Sample description nTPM
Caudate
nTPM: 77.4
Samples: 4

Max nTPM: 86.6
Min nTPM: 72.8
Sample A Female 76.0
Sample B Female 72.8
Sample C Male 86.6
Sample D Male 74.0

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