MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:57.8 nTPM
HPA Brain:53.8 nTPM
GTEx:57.8 nTPM
FANTOM5:125.6 Scaled Tags Per Million
Pig:125.9 nTPM
Mouse:42.4 nTPM
Allen mouse:2.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 53.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 43.5
1870 Female, age 42, unknown 51.3
2411 Female, age 72, unknown 51.3
1833 Male, age 53, unknown 51.0
2019 Male, age 18, unknown 49.1
1830 Male, age 51, unknown 47.6
1827 Male, age 72, unknown 39.1
2666 Male, age 74, left hemisphere 38.0
2828 Female, age 72, unknown 37.7
2219 Male, age 76, both hemispheres 36.4
2586 Male, age 75, left hemisphere 34.0
Dorsal raphe nucleus
nTPM: 40.1
2750 Male, age 76, both hemispheres 47.5
1828 Male, age 53, unknown 41.4
2298 Female, age 72, unknown 40.3
2016 Female, age 72, unknown 38.6
2047 Male, age 72, unknown 32.7
Inferior colliculus
nTPM: 39.4
1848 Female, age 42, unknown 40.2
2097 Female, age 72, unknown 39.9
2849 Male, age 72, unknown 39.1
1890 Male, age 53, unknown 38.5
Median raphe nucleus
nTPM: 41.5
2220 Male, age 76, midline 41.5
Periaquaductal grey, anterior
nTPM: 34.2
2502 Female, age 75, unknown 36.3
1947 Male, age 18, unknown 34.7
1795 Male, age 51, unknown 31.6
Periaquaductal grey, dorsal
nTPM: 35.6
2850 Male, age 76, both hemispheres 39.3
2464 Female, age 72, unknown 39.1
1831 Male, age 72, unknown 33.8
1840 Male, age 53, unknown 30.1
Periaquaductal grey, lateral
nTPM: 34.5
2140 Male, age 76, both hemispheres 35.8
2053 Male, age 18, unknown 33.9
2272 Male, age 74, both hemispheres 33.6
Pretectal area
nTPM: 38.7
1817 Female, age 42, unknown 46.5
1815 Male, age 53, unknown 45.4
2007 Male, age 72, unknown 44.0
1816 Male, age 51, unknown 39.5
2316 Male, age 76, right hemisphere 38.3
1944 Female, age 72, unknown 38.0
2224 Female, age 72, unknown 37.3
2273 Male, age 74, both hemispheres 35.9
2825 Male, age 18, unknown 35.6
2667 Female, age 75, unknown 35.5
2407 Male, age 75, both hemispheres 30.2
Red nucleus
nTPM: 53.8
1865 Male, age 51, unknown 61.0
1821 Female, age 72, unknown 60.8
2503 Female, age 72, unknown 60.8
1904 Male, age 53, unknown 59.1
1954 Female, age 42, unknown 56.1
2769 Male, age 72, unknown 55.4
2823 Male, age 76, right hemisphere 54.9
2227 Male, age 72, unknown 52.7
2725 Female, age 75, unknown 52.4
2785 Male, age 18, unknown 50.7
2588 Male, age 74, left hemisphere 47.6
2584 Male, age 75, left hemisphere 33.8
Substantia nigra
nTPM: 39.6
1889 Female, age 72, unknown 47.1
2699 Male, age 18, unknown 41.8
1851 Male, age 51, unknown 41.5
2241 Male, age 72, unknown 40.3
1916 Female, age 42, unknown 39.8
2409 Female, age 72, unknown 38.9
1941 Male, age 53, unknown 38.0
2590 Female, age 75, unknown 37.6
2583 Male, age 75, right hemisphere 36.7
2665 Male, age 74, both hemispheres 34.4
Superior colliculus
nTPM: 40.1
1913 Female, age 42, unknown 50.1
1995 Male, age 72, unknown 46.7
2587 Male, age 74, left hemisphere 44.9
2668 Female, age 75, unknown 43.1
1895 Male, age 76, right hemisphere 40.7
1839 Male, age 51, unknown 38.7
2261 Male, age 18, unknown 37.2
2087 Female, age 72, unknown 35.2
1796 Male, age 53, unknown 34.7
2664 Male, age 75, both hemispheres 29.8
Ventral tegmental area
nTPM: 42.1
2223 Female, age 72, unknown 50.3
2410 Female, age 72, unknown 48.8
2218 Male, age 76, both hemispheres 44.3
1915 Female, age 42, unknown 38.8
2021 Male, age 53, unknown 36.7
1942 Male, age 51, unknown 33.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 57.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 57.8
Samples: 139

Max nTPM: 126.6
Min nTPM: 33.5
Std nTPM: 15.1
Median nTPM: 55.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 126.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 109.9
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 90.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 89.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 89.2
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 88.0
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 86.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 82.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 82.6
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 81.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 80.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 125.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 125.6
FF:10158-103A5 76 years, female 125.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 125.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 110.9
Samples: 4

Max nTPM: 137.8
Min nTPM: 84.2
Sample A Female 129.5
Sample B Female 84.2
Sample C Male 91.9
Sample D Male 137.8
Midbrain
nTPM: 125.9
Samples: 4

Max nTPM: 215.2
Min nTPM: 81.8
Sample A Female 215.2
Sample B Female 119.9
Sample C Male 81.8
Sample D Male 86.7
Periaqueductal gray
nTPM: 90.2
Samples: 3

Max nTPM: 103.2
Min nTPM: 83.6
Sample B Female 103.2
Sample C Male 83.8
Sample D Male 83.6
Superior colliculi
nTPM: 105.8
Samples: 4

Max nTPM: 133.7
Min nTPM: 73.3
Sample A Female 133.7
Sample B Female 73.3
Sample C Male 102.8
Sample D Male 113.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 42.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 42.4
Samples: 4

Max nTPM: 43.8
Min nTPM: 40.7
Sample A Male 42.6
Sample B Male 43.8
Sample C Female 42.4
Sample D Female 40.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.2
70445592 Antisense, RP_050614_04_B07, Mouse strain C57BL/6J (56 days, male) 3.3
74988519 Antisense, RP_060315_05_E07, Mouse strain C57BL/6J (56 days, male) 1.2

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