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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:80.5 nTPM
HPA Brain:54.2 nTPM
GTEx:80.5 nTPM
FANTOM5:107.1 Scaled Tags Per Million
Pig:153.6 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

54.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 48.2
1981 Female, age 72, midline 60.4
2048 Male, age 55, midline 49.9
2194 Female, age 79, both hemispheres 46.0
2816 Male, age 47, midline 44.7
2565 Male, age 75, midline 40.2
Cervical spinal cord, dorsal horn
nTPM: 54.2
2173 Female, age 72, unknown 73.6
2296 Male, age 66, both hemispheres 68.9
2069 Male, age 47, both hemispheres 53.5
1877 Male, age 55, unknown 47.3
2721 Male, age 90, both hemispheres 41.4
2297 Male, age 75, both hemispheres 40.4
Cervical spinal cord, ventral horn
nTPM: 53.5
2098 Female, age 72, unknown 63.3
2809 Male, age 90, both hemispheres 60.5
2480 Male, age 75, both hemispheres 56.1
2068 Male, age 55, unknown 49.6
2295 Male, age 66, both hemispheres 49.0
2820 Female, age 79, both hemispheres 42.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

80.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 80.5
Samples: 159

Max nTPM: 127.6
Min nTPM: 39.1
Std nTPM: 19.0
Median nTPM: 80.6
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 127.6
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 127.3
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 121.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 120.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 120.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 114.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 114.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 112.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 108.3
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 108.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 108.0
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 108.0
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 106.4
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 106.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 106.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 105.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 104.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 104.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 103.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 103.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 103.3
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 103.1
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 102.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 101.7
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 100.9
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 100.8
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 99.2
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 98.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 97.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 96.9
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 96.9
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 96.2
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 96.0
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 95.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 94.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 94.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 94.3
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 94.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 93.7
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 93.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 93.7
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 93.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 93.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 93.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 92.5
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 92.2
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 91.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 91.7
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 91.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 91.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 90.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 90.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 90.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 88.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 88.4
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 88.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 88.2
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 88.0
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 87.9
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 87.5
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 87.5
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 87.1
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 87.0
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 86.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 86.6
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 86.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 86.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 86.1
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 85.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 85.7
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 85.2
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 84.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 84.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 84.7
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 84.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 83.9
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 81.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 81.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 81.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 80.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 80.5
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 80.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 79.2
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 78.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 78.3
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 77.7
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 77.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 77.4
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 77.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 77.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 76.4
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 76.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 75.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 75.3
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 74.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 73.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 73.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 73.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 73.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 73.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 72.9
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 72.2
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 71.1
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 71.1
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 70.8
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 70.7
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 70.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 70.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 70.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 70.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 70.1
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 69.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 69.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 69.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 69.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 68.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 68.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 68.5
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 67.9
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 67.3
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 67.0
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 66.9
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 66.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 65.3
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 64.9
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 64.9
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 63.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 63.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 62.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 62.9
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 62.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 60.4
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 59.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 59.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 58.4
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 58.4
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 58.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 58.1
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 57.9
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 57.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 55.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 55.2
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 54.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 54.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 54.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 54.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 52.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 52.3
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 51.9
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 50.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 47.6
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 47.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 47.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 47.3
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 47.3
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 46.2
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 41.2
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 39.8
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 39.1
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

107.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 107.1
FF:10181-103D1 60 years, female 119.5
FF:10159-103A6 76 years, female 94.6

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

153.6
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 133.3
Samples: 4

Max nTPM: 148.4
Min nTPM: 125.8
Sample A Female 132.3
Sample B Female 148.4
Sample C Male 125.8
Sample D Male 126.8
Ventral spinal cord
nTPM: 153.6
Samples: 4

Max nTPM: 173.6
Min nTPM: 132.3
Sample A Female 152.7
Sample B Female 155.6
Sample C Male 132.3
Sample D Male 173.6

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