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  • RPS3A
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:852.6 nTPM
FANTOM5:31.3 Scaled Tags Per Million
Pig:309.9 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA047100
Glial cells Not detected
Neuronal cells High



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

852.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 852.6
Samples: 246

Max nTPM: 2493.9
Min nTPM: 463.1
Std nTPM: 279.6
Median nTPM: 789.0
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 2493.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 2016.2
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 1887.0
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 1848.2
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 1778.6
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 1741.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 1722.5
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 1495.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 1476.3
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 1469.6
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 1453.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 1374.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 1359.5
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 1359.5
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 1341.8
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 1329.8
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 1265.0
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 1261.0
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 1253.2
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 1241.6
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 1219.2
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 1181.3
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 1178.6
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 1174.3
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 1173.7
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 1171.7
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 1149.2
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 1100.1
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 1089.4
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 1086.2
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 1084.7
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 1080.7
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 1070.4
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 1070.0
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 1063.8
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 1059.6
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 1051.3
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 1042.1
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 1036.7
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 1036.3
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 1025.3
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 1024.9
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 1016.2
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 1015.3
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 1014.6
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 1014.4
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 1012.2
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 1010.8
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 1009.6
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 998.6
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 997.2
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 993.2
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 992.6
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 992.5
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 985.1
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 983.9
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 981.1
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 975.7
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 975.7
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 974.9
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 972.2
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 969.2
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 963.6
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 957.3
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 957.2
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 951.5
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 948.3
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 946.8
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 941.0
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 939.6
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 937.7
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 937.0
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 936.3
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 933.0
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 932.8
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 928.7
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 924.4
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 924.0
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 923.0
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 920.6
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 915.3
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 914.7
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 914.0
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 912.4
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 912.2
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 911.6
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 908.7
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 908.4
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 902.4
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 888.9
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 887.1
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 885.7
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 876.5
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 875.5
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 874.1
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 867.2
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 863.4
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 855.2
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 847.3
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 847.3
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 844.8
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 840.8
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 839.6
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 839.3
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 838.6
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 832.5
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 831.1
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 828.3
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 828.1
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 825.2
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 822.2
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 820.3
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 817.2
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 816.7
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 811.7
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 807.6
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 804.0
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 800.6
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 798.9
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 797.7
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 795.6
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 795.4
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 789.2
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 788.8
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 787.4
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 776.2
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 773.1
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 768.6
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 765.4
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 763.5
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 762.6
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 762.0
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 760.2
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 759.1
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 757.1
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 754.1
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 751.8
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 751.3
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 748.6
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 746.3
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 742.7
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 740.5
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 740.0
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 732.1
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 731.7
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 731.0
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 724.5
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 723.7
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 723.6
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 721.4
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 721.0
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 720.6
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 720.4
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 718.4
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 715.4
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 715.3
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 713.7
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 711.1
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 710.6
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 705.7
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 704.1
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 701.8
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 698.0
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 697.3
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 693.6
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 691.9
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 691.8
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 691.1
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 689.5
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 688.1
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 684.3
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 683.9
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 682.8
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 680.5
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 679.9
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 679.1
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 678.1
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 676.9
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 676.7
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 673.0
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 671.5
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 669.5
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 669.0
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 661.8
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 660.6
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 659.6
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 656.3
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 654.8
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 653.5
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 652.2
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 649.0
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 646.6
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 642.8
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 642.3
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 641.5
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 640.4
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 639.4
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 638.3
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 636.8
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 633.8
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 633.6
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 633.1
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 630.5
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 628.3
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 627.9
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 626.5
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 626.2
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 624.4
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 624.3
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 624.3
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 621.0
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 619.9
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 615.4
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 611.3
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 610.9
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 610.2
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 608.5
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 608.0
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 605.7
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 600.7
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 592.2
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 590.2
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 589.9
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 588.6
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 587.4
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 587.3
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 586.9
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 575.0
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 572.5
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 569.2
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 563.8
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 563.5
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 561.1
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 558.7
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 557.1
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 556.0
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 545.1
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 542.7
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 541.8
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 540.7
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 531.7
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 528.4
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 525.5
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 519.8
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 497.6
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 463.1
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

31.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 31.3
FF:10164-103B2 76 years, female 31.3

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

309.9
Pig sample Sample description nTPM
Caudate
nTPM: 309.9
Samples: 4

Max nTPM: 343.0
Min nTPM: 270.2
Sample A Female 343.0
Sample B Female 316.6
Sample C Male 309.7
Sample D Male 270.2

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