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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1796.5 nTPM
HPA:1246.7 nTPM
GTEx:1796.5 nTPM
FANTOM5:64.4 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA047100
Glandular cells Medium



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1246.7
overview
Male, age 65
Small intestine sample 232
nTPM: 1616.2
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 1235.8
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 1013.8
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 1121.1

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1796.5
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 1796.5
Samples: 187

Max nTPM: 5848.6
Min nTPM: 816.8
Std nTPM: 660.5
Median nTPM: 1692.4
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 5848.6
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 4335.4
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 4017.8
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 3681.3
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 3418.3
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 3360.7
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 3251.1
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 3241.4
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 3215.6
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 3213.0
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 3211.6
GTEX-183FY-1626-SM-793D8 20-29 years, male 2946.2
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 2790.1
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 2787.3
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 2534.6
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 2528.6
GTEX-14PK6-1626-SM-6871I 70-79 years, female 2510.5
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 2481.3
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 2442.5
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 2437.8
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 2435.3
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 2411.3
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 2378.1
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 2376.9
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 2319.9
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 2268.7
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 2249.0
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 2247.7
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 2246.0
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 2240.3
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 2232.7
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 2232.6
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 2231.1
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 2223.9
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 2196.6
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 2175.8
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 2174.8
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 2131.5
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 2116.2
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 2108.8
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 2089.3
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 2066.7
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 2043.3
GTEX-1C475-1426-SM-793CH 40-49 years, female 2042.0
GTEX-14PKU-1626-SM-6871C 40-49 years, female 2040.8
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 2037.8
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 2037.1
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 2033.2
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 2022.5
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 2015.3
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 2013.1
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 1988.1
GTEX-1192X-2526-SM-59868 50-59 years, male 1976.2
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 1973.5
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 1949.9
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 1924.4
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 1923.1
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 1922.8
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 1919.2
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 1918.9
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 1909.4
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 1907.6
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 1906.9
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 1892.1
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 1885.3
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 1880.7
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 1872.7
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 1844.2
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 1838.3
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 1838.0
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 1828.8
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 1822.9
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 1820.7
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 1818.3
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 1811.7
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 1809.0
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 1808.0
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 1804.6
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 1802.6
GTEX-13O61-1326-SM-5KM31 60-69 years, male 1793.6
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 1783.3
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 1781.7
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 1780.0
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 1777.2
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 1762.5
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 1759.2
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 1755.4
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 1755.1
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 1747.1
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 1725.8
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 1716.8
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 1714.2
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 1698.7
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 1692.4
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 1689.7
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 1668.8
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 1667.9
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 1650.7
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 1645.5
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 1641.7
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 1632.5
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 1630.8
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 1624.3
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 1618.5
GTEX-117YX-0326-SM-5GICL 50-59 years, male 1615.1
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 1607.3
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 1605.5
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 1591.5
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 1574.3
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 1571.1
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 1569.8
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 1566.9
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 1552.5
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 1535.2
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 1534.4
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 1529.6
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 1529.5
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 1523.0
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 1518.0
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 1516.9
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 1515.6
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 1507.1
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 1502.4
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 1500.8
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 1500.0
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 1499.5
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 1493.9
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 1473.4
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 1471.8
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 1461.9
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 1454.0
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 1453.0
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 1450.6
GTEX-13113-1226-SM-5EGHT 60-69 years, female 1448.1
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 1432.5
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 1423.8
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 1415.0
GTEX-13111-1426-SM-5DUW3 50-59 years, male 1414.1
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 1411.7
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 1409.6
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 1397.1
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 1394.6
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 1385.3
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 1383.9
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 1381.6
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 1368.0
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 1365.3
GTEX-144GM-1026-SM-79OKU 20-29 years, male 1358.8
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 1353.6
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 1320.4
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 1314.7
GTEX-14PN3-2026-SM-68729 60-69 years, female 1303.1
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 1283.0
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 1280.5
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 1273.6
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 1262.1
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 1250.9
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 1246.5
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 1243.1
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 1238.2
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 1227.8
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 1221.6
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 1210.9
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 1194.5
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 1193.2
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 1179.7
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 1169.8
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 1162.2
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 1158.3
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 1155.5
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 1137.1
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 1114.2
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 1067.1
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 1062.0
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 1007.9
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 999.5
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 993.0
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 973.1
GTEX-YFCO-1326-SM-664NV 40-49 years, male 967.0
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 962.1
GTEX-1122O-1326-SM-5H11F 60-69 years, female 961.7
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 931.8
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 914.2
GTEX-111YS-1426-SM-5GID8 60-69 years, male 873.4
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 851.5
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 849.8
GTEX-ZTSS-0926-SM-59865 40-49 years, male 816.8
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

64.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 64.4
FF:10024-101D6 15,40,85 years, mixed 64.4

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