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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1275.2 nTPM
HPA Brain:523.0 nTPM
GTEx:1275.2 nTPM
FANTOM5:26.4 Scaled Tags Per Million
Pig:616.1 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

523.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 376.8
1981 Female, age 72, midline 495.0
2048 Male, age 55, midline 385.8
2565 Male, age 75, midline 376.4
2194 Female, age 79, both hemispheres 325.0
2816 Male, age 47, midline 301.9
Cervical spinal cord, dorsal horn
nTPM: 411.0
2173 Female, age 72, unknown 558.2
2069 Male, age 47, both hemispheres 542.4
2296 Male, age 66, both hemispheres 447.3
1877 Male, age 55, unknown 403.2
2721 Male, age 90, both hemispheres 272.9
2297 Male, age 75, both hemispheres 241.7
Cervical spinal cord, ventral horn
nTPM: 523.0
2480 Male, age 75, both hemispheres 705.4
2098 Female, age 72, unknown 670.9
2809 Male, age 90, both hemispheres 606.4
2295 Male, age 66, both hemispheres 509.7
2068 Male, age 55, unknown 422.5
2820 Female, age 79, both hemispheres 223.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1275.2
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 1275.2
Samples: 159

Max nTPM: 2587.1
Min nTPM: 580.1
Std nTPM: 424.6
Median nTPM: 1183.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 2587.1
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 2543.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 2355.2
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 2318.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 2262.2
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 2247.7
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 2202.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 2168.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 2139.7
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 2114.7
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 2104.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 2066.7
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 1935.5
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 1928.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 1927.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 1916.7
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 1882.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 1844.9
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 1831.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 1820.1
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 1817.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 1796.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 1741.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 1723.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 1715.7
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 1715.6
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 1700.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 1693.8
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 1645.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 1638.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 1634.0
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 1627.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 1587.9
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 1577.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 1572.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 1565.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 1543.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 1530.7
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 1524.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 1519.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 1516.6
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 1513.4
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 1510.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 1502.2
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 1483.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 1437.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 1418.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 1418.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 1393.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 1387.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 1380.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 1371.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 1370.6
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 1370.1
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 1344.6
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 1341.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 1341.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 1328.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 1328.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 1317.4
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 1314.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 1304.8
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 1291.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 1287.5
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 1281.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 1274.6
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 1267.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 1261.7
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 1251.3
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 1250.0
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 1249.4
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 1225.2
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 1222.8
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 1217.4
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 1215.7
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 1209.9
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 1208.9
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 1201.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 1185.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 1183.8
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 1176.1
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 1172.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 1172.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 1166.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 1158.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 1152.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 1142.1
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 1125.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 1124.2
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 1121.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 1118.3
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 1117.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 1111.5
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 1104.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 1101.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 1098.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 1084.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 1080.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 1073.4
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 1066.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 1059.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 1058.9
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 1056.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 1053.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 1048.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 1046.3
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 1045.6
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 1025.1
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 1019.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 1016.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 1014.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 1003.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 987.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 981.5
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 981.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 979.4
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 977.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 977.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 968.5
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 967.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 964.2
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 961.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 955.5
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 954.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 926.2
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 920.2
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 919.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 917.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 914.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 905.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 903.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 897.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 893.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 880.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 872.5
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 861.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 860.1
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 854.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 854.4
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 854.2
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 844.4
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 843.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 809.1
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 805.4
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 796.4
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 790.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 784.9
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 782.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 775.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 771.0
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 738.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 729.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 699.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 682.0
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 646.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 640.0
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 598.9
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 589.0
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 580.1
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

26.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 26.4
FF:10181-103D1 60 years, female 34.0
FF:10159-103A6 76 years, female 18.8

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

616.1
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 616.1
Samples: 4

Max nTPM: 918.7
Min nTPM: 419.9
Sample A Female 427.5
Sample B Female 698.4
Sample C Male 918.7
Sample D Male 419.9
Ventral spinal cord
nTPM: 512.8
Samples: 4

Max nTPM: 587.7
Min nTPM: 405.7
Sample A Female 405.7
Sample B Female 560.3
Sample C Male 587.7
Sample D Male 497.4

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