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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:2408.5 nTPM
GTEx:2408.5 nTPM
FANTOM5:65.5 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA047100
Squamous epithelial cells Medium


VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2408.5
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 2408.5
Samples: 156

Max nTPM: 7004.3
Min nTPM: 1201.0
Std nTPM: 688.9
Median nTPM: 2406.8
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 7004.3
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 5073.5
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 4959.0
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 3730.3
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 3679.5
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 3531.9
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 3342.2
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 3265.3
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 3258.7
GTEX-16NPV-2526-SM-6M483 50-59 years, female 3164.1
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 3156.1
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 3100.6
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 3098.3
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 3090.8
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 3084.7
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 3077.4
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 3056.3
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 3028.6
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 2988.4
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 2987.3
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 2971.6
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 2957.9
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 2935.5
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 2915.8
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 2911.6
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 2870.6
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 2845.1
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 2840.2
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 2835.3
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 2832.6
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 2832.6
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 2812.4
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 2802.1
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 2786.4
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 2783.8
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 2768.2
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 2749.6
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 2749.5
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 2744.3
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 2743.4
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 2740.2
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 2726.3
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 2713.8
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 2706.2
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 2703.3
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 2680.2
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 2669.6
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 2645.2
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 2634.8
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 2630.8
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 2627.2
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 2616.1
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 2591.1
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 2579.8
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 2579.1
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 2570.0
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 2564.0
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 2559.4
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 2557.8
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 2511.6
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 2498.2
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 2494.8
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 2490.7
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 2489.5
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 2485.2
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 2473.2
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 2472.9
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 2468.7
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 2461.1
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 2455.9
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 2441.0
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 2436.5
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 2434.9
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 2434.0
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 2424.1
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 2421.1
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 2420.7
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 2414.1
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 2399.4
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 2383.8
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 2359.2
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 2320.2
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 2307.8
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 2259.3
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 2252.8
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 2229.0
GTEX-14PKU-1326-SM-6871B 40-49 years, female 2204.7
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 2202.2
GTEX-11I78-2026-SM-5987C 50-59 years, female 2193.9
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 2185.2
GTEX-1C475-0526-SM-793AC 40-49 years, female 2166.4
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 2150.2
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 2149.1
GTEX-S341-1226-SM-4AD5S 40-49 years, female 2142.3
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 2138.2
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 2136.7
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 2134.6
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 2124.1
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 2115.7
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 2099.4
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 2089.1
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 2075.8
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 2075.2
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 2072.9
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 2059.0
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 2058.2
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 2050.4
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 2032.4
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 2030.4
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 2029.4
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 2022.5
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 2021.1
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 1989.7
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 1988.4
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 1988.0
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 1976.2
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 1971.9
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 1971.4
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 1970.5
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 1934.4
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 1924.5
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 1903.1
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 1883.4
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 1880.5
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 1860.3
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 1845.5
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 1838.0
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 1826.0
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 1820.8
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 1812.1
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 1783.2
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 1765.8
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 1761.6
GTEX-QCQG-1226-SM-48U23 50-59 years, female 1758.1
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 1757.2
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 1751.8
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 1731.8
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 1729.3
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 1724.9
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 1718.3
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 1711.5
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 1698.7
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 1688.7
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 1680.0
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 1678.9
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 1669.6
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 1667.3
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 1658.9
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 1651.6
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 1628.3
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 1573.1
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 1571.4
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 1546.8
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 1421.2
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 1348.4
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 1201.0
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

65.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 65.5
FF:10204-103F6 68 years, female 65.5

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