We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
RPL7
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • RPL7
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1056.8 nTPM
HPA Brain:437.5 nTPM
GTEx:1056.8 nTPM
FANTOM5:3.9 Scaled Tags Per Million
Pig:366.5 nTPM
Mouse:504.5 nTPM
Allen mouse:22.8 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

437.5
Sample id Sample description nTPM
Amygdala
nTPM: 437.5
2695 Female, age 67, right hemisphere 571.2
2514 Male, age 75, right hemisphere 470.4
1987 Female, age 91, left hemisphere 397.7
2517 Female, age 94, left hemisphere 388.3
2814 Male, age 76, right hemisphere 359.6
Basal amygdala
nTPM: 361.1
2827 Female, age 67, right hemisphere 457.3
2609 Male, age 75, right hemisphere 386.5
2110 Male, age 80, left hemisphere 386.1
2685 Female, age 94, left hemisphere 360.8
1955 Male, age 76, both hemispheres 291.5
2243 Female, age 91, right hemisphere 284.0
Central amygdala
nTPM: 399.4
2826 Female, age 94, left hemisphere 576.0
2515 Male, age 75, right hemisphere 437.7
2239 Male, age 80, left hemisphere 332.6
1905 Male, age 76, both hemispheres 328.3
2701 Female, age 91, right hemisphere 322.4
Corticomedial amygdala
nTPM: 351.2
2428 Male, age 75, right hemisphere 427.6
2829 Male, age 80, left hemisphere 390.9
2535 Female, age 67, right hemisphere 343.5
2429 Female, age 94, left hemisphere 329.8
2242 Female, age 91, right hemisphere 312.9
2240 Male, age 76, both hemispheres 302.3
Lateral amygdala
nTPM: 405.5
2830 Female, age 67, right hemisphere 562.2
2516 Male, age 75, right hemisphere 532.5
2534 Female, age 94, left hemisphere 397.1
2256 Male, age 80, left hemisphere 329.6
1883 Male, age 76, both hemispheres 329.2
2255 Female, age 91, right hemisphere 282.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1056.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 1056.8
Samples: 152

Max nTPM: 3176.5
Min nTPM: 543.4
Std nTPM: 369.3
Median nTPM: 978.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 3176.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 2497.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 2467.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 2209.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1995.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1900.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1693.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 1673.6
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 1658.4
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 1656.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 1574.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1562.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 1559.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1556.0
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 1509.4
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 1406.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 1390.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 1380.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 1354.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1341.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1297.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 1296.9
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 1289.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 1286.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 1284.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 1272.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 1261.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 1260.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1254.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 1252.6
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 1246.9
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 1245.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 1238.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 1219.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 1213.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1190.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 1190.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 1171.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1165.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 1149.0
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 1147.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1140.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 1139.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 1137.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 1127.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 1113.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 1113.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 1108.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 1084.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 1084.3
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 1082.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 1082.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 1081.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 1075.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 1074.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 1071.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 1068.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 1063.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 1063.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 1059.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 1052.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 1052.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 1049.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 1041.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1032.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 1029.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 1020.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 1017.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1015.6
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 1009.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 1007.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 1001.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 999.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 993.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 988.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 983.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 974.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 971.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 970.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 970.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 963.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 958.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 948.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 943.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 938.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 936.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 934.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 928.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 927.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 926.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 922.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 922.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 922.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 915.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 914.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 902.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 901.3
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 893.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 889.4
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 885.6
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 883.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 877.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 874.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 874.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 872.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 868.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 865.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 857.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 856.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 854.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 847.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 846.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 831.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 830.5
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 812.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 811.6
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 808.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 807.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 801.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 799.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 798.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 792.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 792.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 789.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 788.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 787.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 779.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 779.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 774.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 772.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 758.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 755.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 739.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 731.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 724.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 713.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 709.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 705.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 703.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 699.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 688.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 681.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 679.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 678.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 673.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 665.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 659.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 639.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 629.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 596.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 596.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 543.4
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

3.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 3.9
FF:10151-102I7 76 years, female 3.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

366.5
Pig sample Sample description nTPM
Amygdala
nTPM: 366.5
Samples: 4

Max nTPM: 456.6
Min nTPM: 232.4
Sample A Female 415.1
Sample B Female 456.6
Sample C Male 361.8
Sample D Male 232.4

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

504.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 504.6
Samples: 4

Max nTPM: 525.2
Min nTPM: 486.3
Sample A Male 486.3
Sample B Male 525.2
Sample C Female 513.3
Sample D Female 493.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

22.8
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 22.8
68410596 Antisense, RP_041214_02_C02, Mouse strain C57BL/6J (56 days, male) 22.8

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org