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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1380.2 nTPM
HPA:1225.8 nTPM
GTEx:1380.2 nTPM
FANTOM5:2.5 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA058373
Glandular cells High



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1225.8
overview
Male, age 65
Small intestine sample 232
nTPM: 1600.8
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 1153.9
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 1000.1
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 1148.3

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1380.2
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 1380.2
Samples: 187

Max nTPM: 2960.1
Min nTPM: 732.4
Std nTPM: 375.8
Median nTPM: 1328.7
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 2960.1
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 2878.2
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 2727.0
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 2601.6
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 2358.6
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 2320.0
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 2197.0
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 2156.2
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 2073.1
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 2053.1
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 1985.6
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 1980.2
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 1977.7
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 1949.3
GTEX-183FY-1626-SM-793D8 20-29 years, male 1940.4
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 1932.5
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 1927.9
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 1927.2
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 1892.1
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 1867.2
GTEX-1192X-2526-SM-59868 50-59 years, male 1861.7
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 1852.4
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 1765.6
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 1747.5
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 1736.4
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 1706.5
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 1675.1
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 1660.6
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 1656.9
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 1654.8
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 1649.6
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 1641.8
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 1629.3
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 1622.8
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 1616.2
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 1604.8
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 1598.1
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 1592.9
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 1581.2
GTEX-117YX-0326-SM-5GICL 50-59 years, male 1553.0
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 1551.4
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 1545.2
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 1541.1
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 1540.1
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 1536.4
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 1531.7
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 1518.2
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 1514.1
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 1513.9
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 1512.1
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 1506.4
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 1505.0
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 1495.7
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 1491.7
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 1491.1
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 1489.7
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 1485.8
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 1482.9
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 1479.8
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 1478.3
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 1475.6
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 1473.0
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 1472.0
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 1462.3
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 1455.0
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 1438.4
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 1435.8
GTEX-13O61-1326-SM-5KM31 60-69 years, male 1434.6
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 1433.5
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 1424.7
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 1417.3
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 1416.0
GTEX-14PKU-1626-SM-6871C 40-49 years, female 1415.2
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 1415.2
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 1411.6
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 1410.6
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 1410.4
GTEX-1C475-1426-SM-793CH 40-49 years, female 1406.8
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 1399.4
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 1397.4
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 1396.1
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 1394.6
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 1384.6
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 1374.2
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 1369.4
GTEX-14PK6-1626-SM-6871I 70-79 years, female 1369.2
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 1350.8
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 1348.1
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 1340.0
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 1339.0
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 1335.4
GTEX-13111-1426-SM-5DUW3 50-59 years, male 1331.8
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 1330.9
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 1328.7
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 1328.4
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 1322.8
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 1317.4
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 1310.3
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 1307.8
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 1298.4
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 1298.0
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 1294.8
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 1288.0
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 1287.0
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 1285.3
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 1284.8
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 1275.3
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 1271.7
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 1269.1
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 1265.1
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 1263.6
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 1263.0
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 1261.9
GTEX-13113-1226-SM-5EGHT 60-69 years, female 1260.8
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 1258.8
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 1258.4
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 1258.4
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 1257.3
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 1252.6
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 1236.4
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 1236.0
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 1233.6
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 1201.2
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 1199.0
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 1198.0
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 1196.4
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 1195.4
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 1194.1
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 1189.2
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 1184.3
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 1181.0
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 1176.3
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 1175.3
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 1174.5
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 1173.9
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 1146.6
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 1135.2
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 1134.9
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 1124.1
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 1124.0
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 1118.4
GTEX-144GM-1026-SM-79OKU 20-29 years, male 1115.2
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 1104.9
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 1104.5
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 1104.2
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 1101.2
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 1099.2
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 1092.9
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 1091.2
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 1087.9
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 1082.3
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 1078.4
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 1067.7
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 1062.8
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 1062.2
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 1053.5
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 1052.7
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 1047.7
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 1045.0
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 1037.5
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 1029.0
GTEX-14PN3-2026-SM-68729 60-69 years, female 1027.4
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 1014.4
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 1012.2
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 1011.1
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 1008.5
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 988.3
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 981.4
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 978.2
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 976.1
GTEX-1122O-1326-SM-5H11F 60-69 years, female 970.8
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 942.4
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 940.6
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 929.3
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 923.4
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 911.1
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 906.4
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 901.8
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 884.5
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 871.6
GTEX-YFCO-1326-SM-664NV 40-49 years, male 842.1
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 819.2
GTEX-111YS-1426-SM-5GID8 60-69 years, male 798.5
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 788.5
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 769.5
GTEX-ZTSS-0926-SM-59865 40-49 years, male 764.9
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 732.4
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

2.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 2.5
FF:10024-101D6 15,40,85 years, mixed 2.5

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