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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:2037.1 nTPM
GTEx:2037.1 nTPM
FANTOM5:0.9 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA058373
Squamous epithelial cells Medium



VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2037.1
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 2037.1
Samples: 156

Max nTPM: 4342.3
Min nTPM: 1226.6
Std nTPM: 457.7
Median nTPM: 2003.1
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 4342.3
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 4231.6
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 3352.0
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 3039.7
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 2941.0
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 2907.6
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 2810.8
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 2741.2
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 2683.0
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 2681.4
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 2672.4
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 2638.0
GTEX-16NPV-2526-SM-6M483 50-59 years, female 2619.6
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 2582.4
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 2540.3
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 2508.0
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 2493.8
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 2468.4
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 2447.9
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 2429.5
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 2420.2
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 2400.2
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 2397.2
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 2392.3
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 2384.2
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 2368.6
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 2363.4
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 2344.7
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 2344.0
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 2334.7
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 2322.5
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 2317.9
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 2315.6
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 2313.7
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 2295.4
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 2291.5
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 2291.2
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 2290.9
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 2290.1
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 2286.0
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 2266.6
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 2262.4
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 2257.3
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 2257.0
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 2252.0
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 2238.0
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 2225.2
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 2188.4
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 2184.0
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 2174.6
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 2166.4
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 2160.0
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 2155.2
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 2143.4
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 2141.3
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 2133.8
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 2133.1
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 2123.3
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 2122.7
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 2118.6
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 2114.5
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 2112.9
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 2100.3
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 2100.0
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 2096.7
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 2092.3
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 2086.5
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 2070.3
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 2050.0
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 2043.1
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 2037.2
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 2036.5
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 2035.5
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 2019.7
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 2013.5
GTEX-S341-1226-SM-4AD5S 40-49 years, female 2012.4
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 2011.7
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 2005.2
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 2001.0
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 2000.9
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 1991.8
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 1965.5
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 1963.2
GTEX-11I78-2026-SM-5987C 50-59 years, female 1953.5
GTEX-14PKU-1326-SM-6871B 40-49 years, female 1944.6
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 1944.4
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 1936.4
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 1934.3
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 1929.9
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 1928.4
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 1926.6
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 1919.6
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 1912.2
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 1900.3
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 1898.4
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 1892.3
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 1891.3
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 1876.2
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 1872.4
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 1869.6
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 1865.8
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 1855.8
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 1851.1
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 1851.0
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 1845.1
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 1832.6
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 1825.3
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 1804.8
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 1804.4
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 1802.2
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 1777.0
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 1751.8
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 1740.1
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 1729.7
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 1717.7
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 1712.0
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 1693.3
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 1691.5
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 1690.3
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 1673.7
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 1662.6
GTEX-1C475-0526-SM-793AC 40-49 years, female 1659.7
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 1656.3
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 1648.8
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 1648.3
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 1643.4
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 1634.5
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 1630.0
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 1624.7
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 1611.5
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 1609.6
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 1608.4
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 1603.3
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 1590.3
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 1577.3
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 1568.8
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 1561.8
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 1553.9
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 1543.4
GTEX-QCQG-1226-SM-48U23 50-59 years, female 1539.1
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 1533.8
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 1523.3
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 1516.6
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 1513.7
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 1510.1
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 1503.5
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 1499.1
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 1492.2
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 1490.2
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 1484.3
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 1432.4
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 1425.4
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 1369.1
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 1253.9
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 1232.6
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 1226.6
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

0.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 0.9
FF:10204-103F6 68 years, female 0.9

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