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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1153.6 nTPM
HPA Brain:614.2 nTPM
GTEx:1153.6 nTPM
FANTOM5:3.4 Scaled Tags Per Million
Pig:724.6 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

614.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 453.0
1981 Female, age 72, midline 553.5
2565 Male, age 75, midline 478.2
2048 Male, age 55, midline 462.0
2194 Female, age 79, both hemispheres 395.4
2816 Male, age 47, midline 375.9
Cervical spinal cord, dorsal horn
nTPM: 458.8
2173 Female, age 72, unknown 624.4
2069 Male, age 47, both hemispheres 541.8
2296 Male, age 66, both hemispheres 540.1
1877 Male, age 55, unknown 447.9
2297 Male, age 75, both hemispheres 299.3
2721 Male, age 90, both hemispheres 299.3
Cervical spinal cord, ventral horn
nTPM: 614.2
2480 Male, age 75, both hemispheres 841.4
2809 Male, age 90, both hemispheres 720.0
2098 Female, age 72, unknown 712.6
2295 Male, age 66, both hemispheres 574.2
2068 Male, age 55, unknown 497.5
2820 Female, age 79, both hemispheres 339.6

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1153.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 1153.6
Samples: 159

Max nTPM: 2134.7
Min nTPM: 576.6
Std nTPM: 310.3
Median nTPM: 1107.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 2134.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 2129.5
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 1888.5
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 1870.1
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 1798.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 1768.7
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 1753.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 1742.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 1715.4
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 1696.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 1688.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 1683.3
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 1647.2
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 1642.3
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 1598.4
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 1571.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 1568.3
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 1558.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 1554.5
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 1545.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 1536.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 1504.7
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 1494.8
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 1485.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 1485.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 1484.6
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 1458.0
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 1453.2
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 1435.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 1416.8
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 1416.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 1412.6
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 1411.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 1408.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 1408.2
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 1394.1
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 1385.8
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 1370.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 1363.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 1346.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 1326.9
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 1315.4
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 1313.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 1312.5
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 1311.3
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 1307.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 1304.9
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 1302.9
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 1302.5
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 1270.2
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 1269.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 1263.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 1262.9
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 1258.5
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 1245.6
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 1243.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 1235.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 1227.7
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 1211.4
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 1210.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 1206.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 1204.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 1185.0
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 1183.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 1183.2
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 1170.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 1169.3
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 1159.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 1152.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 1152.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 1148.9
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 1147.7
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 1146.5
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 1145.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 1144.3
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 1140.1
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 1128.5
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 1124.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 1115.1
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 1107.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 1105.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 1100.6
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 1099.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 1099.6
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 1091.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 1083.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 1069.5
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 1057.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 1054.0
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 1051.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 1051.0
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 1044.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 1043.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 1043.1
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 1042.3
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 1040.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 1034.8
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 1027.9
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 1027.8
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 1018.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 1012.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 1010.1
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 1007.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 1004.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 998.8
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 985.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 980.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 968.3
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 963.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 949.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 949.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 943.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 943.0
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 941.9
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 940.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 933.1
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 929.8
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 928.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 928.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 926.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 925.8
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 920.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 918.8
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 901.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 893.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 892.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 892.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 888.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 887.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 882.9
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 860.8
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 845.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 844.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 843.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 841.1
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 840.7
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 832.8
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 832.1
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 830.5
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 819.9
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 815.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 811.5
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 811.1
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 808.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 798.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 784.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 773.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 770.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 767.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 736.3
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 734.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 714.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 702.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 693.1
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 652.1
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 623.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 597.3
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 581.6
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 576.6
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

3.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 3.4
FF:10159-103A6 76 years, female 3.6
FF:10181-103D1 60 years, female 3.2

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

724.6
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 724.6
Samples: 4

Max nTPM: 1080.1
Min nTPM: 487.3
Sample A Female 487.3
Sample B Female 822.9
Sample C Male 1080.1
Sample D Male 508.1
Ventral spinal cord
nTPM: 616.2
Samples: 4

Max nTPM: 674.8
Min nTPM: 491.4
Sample A Female 491.4
Sample B Female 670.5
Sample C Male 674.8
Sample D Male 628.2

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