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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
560.8
nTPM
FANTOM5:
311.7
Scaled Tags Per Million
Pig:
101.6
nTPM
Allen mouse:
6.9
Expression energy
PONS - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
560.8
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 485.0
2090
Male, age 80, both hemispheres
586.8
2301
Female, age 85, both hemispheres
545.8
2188
Female, age 91, both hemispheres
460.0
1984
Male, age 76, both hemispheres
347.3
Dorsal cochlear nucleus nTPM: 434.8
2370
Male, age 61, both hemispheres
505.0
2378
Male, age 80, both hemispheres
477.7
2058
Male, age 76, both hemispheres
430.5
2187
Female, age 91, both hemispheres
407.9
2802
Male, age 74, right hemisphere
352.9
Dorsal tegmental nucleus nTPM: 393.7
2083
Male, age 80, both hemispheres
471.0
2326
Male, age 74, both hemispheres
380.5
2358
Male, age 61, both hemispheres
373.7
1936
Male, age 76, left hemisphere
349.6
Dorsolateral tegmental area nTPM: 459.4
2337
Male, age 61, both hemispheres
691.2
2751
Female, age 85, both hemispheres
538.0
2654
Male, age 80, both hemispheres
467.2
2360
Male, age 74, both hemispheres
342.7
2141
Male, age 76, both hemispheres
258.1
Kolliker-Fuse nucleus nTPM: 546.3
2315
Male, age 76, right hemisphere
843.0
2793
Female, age 91, left hemisphere
424.5
2163
Male, age 80, both hemispheres
371.5
Lateral lemniscal nuclei nTPM: 342.7
2746
Female, age 85, left hemisphere
459.6
2320
Female, age 91, left hemisphere
366.4
2453
Male, age 74, right hemisphere
319.2
2036
Male, age 80, both hemispheres
288.0
2169
Male, age 76, both hemispheres
280.5
Lateral parabrachial nucleus nTPM: 560.8
2790
Male, age 61, both hemispheres
736.2
2792
Male, age 76, both hemispheres
647.0
2013
Male, age 80, both hemispheres
504.4
2139
Female, age 85, right hemisphere
355.5
Lateral vestibular nucleus nTPM: 412.6
2311
Male, age 80, both hemispheres
486.8
2184
Male, age 76, both hemispheres
338.5
Locus coeruleus nTPM: 246.4
2162
Male, age 80, both hemispheres
291.7
1980
Male, age 76, both hemispheres
262.5
2317
Female, age 72, unknown
262.5
2123
Female, age 91, both hemispheres
261.3
2014
Male, age 55, unknown
229.9
2720
Male, age 74, both hemispheres
214.5
2788
Male, age 74, unknown
202.1
Medial parabrachial nucleus nTPM: 445.4
2463
Female, age 85, right hemisphere
519.2
2156
Male, age 61, both hemispheres
508.1
2170
Female, age 91, both hemispheres
449.6
2854
Male, age 80, both hemispheres
392.2
2786
Male, age 76, both hemispheres
357.7
Medial periolivary nuclei nTPM: 396.8
2081
Male, age 80, both hemispheres
548.1
2791
Male, age 74, right hemisphere
440.9
2458
Female, age 91, both hemispheres
377.6
2063
Male, age 76, both hemispheres
336.2
2171
Female, age 85, both hemispheres
281.0
Motor facial nucleus nTPM: 381.0
2126
Male, age 61, both hemispheres
527.0
2365
Male, age 74, right hemisphere
444.2
2697
Female, age 85, both hemispheres
407.5
2795
Female, age 91, both hemispheres
316.9
2062
Male, age 76, both hemispheres
299.7
2327
Male, age 80, both hemispheres
291.0
Motor trigeminal nucleus nTPM: 381.7
2335
Male, age 61, both hemispheres
433.1
2560
Male, age 74, both hemispheres
384.9
2321
Female, age 91, both hemispheres
371.7
2079
Male, age 80, both hemispheres
359.4
2309
Male, age 76, both hemispheres
359.1
Nuclei of the trapezoid body nTPM: 332.2
2166
Male, age 80, both hemispheres
416.9
2368
Female, age 91, both hemispheres
347.5
1983
Male, age 76, both hemispheres
345.2
2159
Male, age 61, both hemispheres
292.3
2735
Female, age 85, both hemispheres
259.1
Nucleus raphe magnus nTPM: 330.9
2051
Male, age 76, both hemispheres
455.9
2459
Female, age 91, both hemispheres
389.0
2328
Male, age 80, both hemispheres
348.3
2455
Male, age 74, both hemispheres
346.0
2160
Male, age 61, both hemispheres
229.2
2172
Female, age 85, both hemispheres
217.0
Paramedian reticular nucleus nTPM: 412.3
2057
Male, age 80, both hemispheres
499.8
2052
Male, age 76, both hemispheres
423.4
2313
Male, age 61, both hemispheres
393.6
2050
Female, age 85, both hemispheres
332.4
Pedunculopontine tegmental nucleus nTPM: 406.7
2338
Male, age 61, both hemispheres
546.5
2334
Male, age 80, both hemispheres
399.2
1921
Female, age 85, both hemispheres
274.5
Pontine nuclei nTPM: 423.9
2115
Male, age 80, left hemisphere
541.3
2109
Female, age 72, unknown
525.3
2454
Male, age 74, left hemisphere
455.7
2319
Female, age 91, both hemispheres
426.7
1863
Male, age 55, unknown
390.0
1968
Male, age 76, left hemisphere
368.2
2727
Male, age 61, right hemisphere
358.0
2787
Female, age 85, both hemispheres
325.7
Pontine raphe nucleus nTPM: 288.0
2853
Male, age 76, midline
293.9
2122
Female, age 85, midline
282.2
Posteroventral cochlear nucleus nTPM: 493.2
2341
Male, age 80, both hemispheres
611.0
2135
Female, age 91, both hemispheres
563.0
2371
Male, age 61, both hemispheres
488.4
2070
Male, age 76, both hemispheres
473.7
2752
Female, age 85, both hemispheres
329.9
Principal sensory trigeminal nucleus nTPM: 329.1
2367
Female, age 91, left hemisphere
385.3
2324
Male, age 76, both hemispheres
354.0
2008
Male, age 80, left hemisphere
313.4
2158
Male, age 61, both hemispheres
263.9
Reticular pontine nucleus, caudal nTPM: 408.4
2559
Male, age 74, both hemispheres
473.9
2092
Male, age 76, both hemispheres
452.8
2457
Female, age 91, both hemispheres
402.1
2332
Male, age 80, right hemisphere
304.6
Reticular pontine nucleus, oral nTPM: 403.5
2361
Male, age 74, both hemispheres
465.6
1939
Male, age 80, both hemispheres
452.2
2366
Female, age 91, both hemispheres
374.4
2012
Female, age 85, both hemispheres
369.1
2167
Male, age 76, both hemispheres
356.1
Reticulotegmental nucleus nTPM: 347.5
2333
Male, age 80, both hemispheres
403.0
2452
Male, age 74, both hemispheres
363.3
2322
Female, age 91, both hemispheres
363.2
2325
Male, age 76, both hemispheres
260.4
Spinal trigeminal nucleus, oral nTPM: 356.3
2164
Male, age 80, both hemispheres
421.7
1978
Male, age 76, both hemispheres
371.6
2737
Female, age 85, both hemispheres
275.7
Subcoeruleus area nTPM: 376.8
2369
Female, age 85, left hemisphere
618.5
2451
Male, age 74, both hemispheres
338.3
1958
Male, age 80, both hemispheres
332.4
2089
Male, age 76, left hemisphere
329.4
2323
Female, age 91, left hemisphere
265.6
Superior olive nTPM: 404.6
2364
Male, age 74, right hemisphere
484.1
2020
Male, age 76, both hemispheres
460.5
2329
Male, age 80, right hemisphere
399.3
2561
Female, age 91, both hemispheres
359.0
1875
Female, age 85, both hemispheres
320.2
Ventral periolivary nuclei nTPM: 348.4
2023
Male, age 76, both hemispheres
485.8
2165
Male, age 80, both hemispheres
347.7
2794
Female, age 91, left hemisphere
292.0
2130
Female, age 85, both hemispheres
268.0
Ventrolateral tegmental area, A5 NE cell group nTPM: 407.5
2359
Male, age 61, both hemispheres
516.1
2161
Male, age 80, both hemispheres
410.7
2456
Female, age 91, both hemispheres
399.7
2840
Female, age 85, both hemispheres
386.8
1959
Male, age 76, both hemispheres
383.9
2449
Male, age 74, both hemispheres
347.6
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
101.6
Pig sample
Sample description
nTPM
Pons nTPM: 101.7
Samples: 4
Max nTPM: 140.6
Min nTPM: 67.4
Sample A
Female
107.9
Sample B
Female
67.4
Sample C
Male
90.7
Sample D
Male
140.6
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
