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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:507.2 nTPM
HPA Brain:496.5 nTPM
GTEx:507.2 nTPM
FANTOM5:432.9 Scaled Tags Per Million
Pig:358.5 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

496.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 445.6
1981 Female, age 72, midline 601.3
2048 Male, age 55, midline 456.9
2816 Male, age 47, midline 452.4
2194 Female, age 79, both hemispheres 405.8
2565 Male, age 75, midline 311.8
Cervical spinal cord, dorsal horn
nTPM: 454.5
2173 Female, age 72, unknown 763.4
2296 Male, age 66, both hemispheres 618.3
2069 Male, age 47, both hemispheres 448.0
1877 Male, age 55, unknown 411.3
2721 Male, age 90, both hemispheres 277.9
2297 Male, age 75, both hemispheres 208.2
Cervical spinal cord, ventral horn
nTPM: 496.5
2098 Female, age 72, unknown 818.3
2068 Male, age 55, unknown 571.3
2809 Male, age 90, both hemispheres 442.0
2820 Female, age 79, both hemispheres 420.2
2295 Male, age 66, both hemispheres 391.8
2480 Male, age 75, both hemispheres 335.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

507.2
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 507.2
Samples: 159

Max nTPM: 1099.8
Min nTPM: 143.2
Std nTPM: 171.1
Median nTPM: 489.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 1099.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 862.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 839.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 838.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 837.9
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 826.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 787.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 779.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 775.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 773.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 765.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 764.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 757.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 757.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 755.6
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 753.0
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 747.0
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 746.6
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 740.0
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 726.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 722.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 720.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 717.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 711.8
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 710.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 694.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 680.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 666.4
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 658.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 655.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 651.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 649.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 648.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 648.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 646.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 641.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 640.1
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 638.8
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 634.8
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 633.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 631.5
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 622.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 621.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 621.7
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 618.8
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 613.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 607.8
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 604.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 596.7
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 596.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 592.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 589.0
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 587.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 584.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 582.6
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 574.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 573.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 568.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 567.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 562.0
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 557.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 556.6
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 556.3
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 555.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 554.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 554.2
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 551.6
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 548.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 544.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 518.6
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 518.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 516.9
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 513.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 510.0
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 507.6
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 506.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 505.5
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 504.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 502.0
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 489.5
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 488.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 481.8
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 481.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 479.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 477.5
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 475.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 475.3
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 474.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 473.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 462.6
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 453.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 451.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 450.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 447.1
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 446.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 444.4
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 443.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 437.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 436.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 436.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 436.6
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 436.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 436.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 429.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 426.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 426.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 425.8
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 412.4
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 409.2
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 408.9
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 408.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 405.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 402.1
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 402.0
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 392.7
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 388.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 378.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 373.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 368.2
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 361.7
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 361.4
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 360.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 357.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 353.5
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 346.9
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 343.0
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 342.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 341.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 340.7
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 340.3
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 330.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 328.2
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 326.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 325.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 319.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 319.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 319.6
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 310.8
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 310.2
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 308.6
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 301.0
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 298.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 295.0
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 290.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 288.9
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 284.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 283.0
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 282.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 281.2
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 281.0
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 278.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 273.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 262.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 256.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 201.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 184.0
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 177.5
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 165.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 143.2
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

432.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 432.9
FF:10181-103D1 60 years, female 561.8
FF:10159-103A6 76 years, female 303.9

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

358.5
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 342.3
Samples: 4

Max nTPM: 460.2
Min nTPM: 295.3
Sample A Female 295.3
Sample B Female 302.3
Sample C Male 460.2
Sample D Male 311.5
Ventral spinal cord
nTPM: 358.5
Samples: 4

Max nTPM: 417.2
Min nTPM: 306.2
Sample A Female 360.1
Sample B Female 306.2
Sample C Male 350.5
Sample D Male 417.2

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