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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:368.7 nTPM
FANTOM5:242.5 Scaled Tags Per Million
Pig:372.1 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA063339
Glial cells Not detected
Neuronal cells Medium

CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

368.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 368.7
Samples: 246

Max nTPM: 861.1
Min nTPM: 159.9
Std nTPM: 87.5
Median nTPM: 356.8
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 861.1
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 703.6
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 689.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 669.6
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 629.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 623.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 612.3
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 576.1
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 562.2
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 544.2
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 532.2
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 510.4
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 510.2
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 498.5
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 491.8
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 482.6
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 481.3
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 481.2
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 475.4
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 474.8
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 472.8
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 470.4
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 469.3
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 466.7
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 464.4
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 463.4
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 463.3
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 461.6
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 460.9
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 457.3
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 452.8
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 450.5
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 449.1
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 447.2
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 446.6
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 446.3
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 445.3
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 445.1
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 443.5
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 441.7
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 440.8
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 434.9
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 434.4
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 433.6
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 430.0
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 430.0
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 428.4
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 428.2
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 426.3
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 425.4
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 425.1
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 424.5
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 421.5
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 420.5
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 420.0
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 417.7
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 417.2
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 415.9
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 414.5
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 412.8
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 412.3
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 409.3
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 407.2
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 406.6
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 406.6
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 404.8
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 404.2
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 403.5
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 403.2
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 401.9
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 401.4
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 401.1
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 400.3
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 396.3
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 396.3
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 395.9
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 394.7
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 394.5
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 392.2
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 391.9
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 391.5
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 391.1
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 387.2
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 385.2
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 383.6
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 383.6
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 383.3
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 383.3
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 382.8
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 382.6
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 382.2
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 380.2
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 380.2
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 379.4
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 377.5
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 375.1
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 375.0
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 374.8
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 372.8
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 371.9
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 371.6
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 371.2
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 368.4
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 368.3
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 367.4
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 367.3
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 365.9
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 365.8
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 365.7
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 365.5
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 364.8
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 363.7
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 363.2
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 362.4
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 362.0
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 361.9
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 361.2
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 359.4
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 359.1
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 358.5
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 357.5
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 357.1
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 357.1
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 356.6
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 354.9
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 354.3
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 353.7
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 352.8
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 352.4
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 350.2
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 349.7
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 348.5
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 348.3
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 348.0
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 347.8
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 344.7
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 344.1
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 343.4
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 340.0
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 339.5
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 339.1
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 339.1
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 339.0
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 339.0
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 338.5
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 338.1
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 337.0
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 336.1
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 335.7
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 335.0
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 334.2
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 333.4
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 333.1
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 332.5
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 331.9
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 331.7
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 331.6
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 331.3
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 330.7
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 330.7
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 330.5
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 330.1
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 329.7
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 329.1
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 328.6
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 328.2
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 326.7
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 325.9
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 325.6
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 324.8
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 324.7
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 324.6
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 321.8
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 321.3
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 320.9
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 319.6
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 318.7
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 317.8
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 317.3
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 315.9
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 315.1
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 313.5
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 311.5
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 311.1
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 310.0
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 309.9
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 309.4
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 307.8
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 307.6
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 307.4
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 307.0
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 306.4
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 305.9
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 305.0
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 304.9
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 304.6
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 304.2
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 303.9
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 299.3
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 298.5
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 297.8
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 297.3
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 296.1
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 294.9
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 294.8
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 294.8
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 294.6
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 294.4
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 290.8
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 290.3
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 289.9
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 289.3
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 288.6
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 286.9
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 282.7
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 282.0
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 280.8
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 280.6
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 280.2
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 279.1
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 278.9
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 278.0
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 277.1
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 276.5
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 274.0
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 272.7
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 272.2
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 268.4
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 264.7
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 260.3
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 259.9
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 259.7
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 257.5
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 257.0
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 256.1
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 253.5
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 252.6
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 250.9
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 250.6
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 248.4
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 240.7
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 239.2
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 239.2
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 232.9
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 228.4
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 159.9
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

242.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 242.5
FF:10164-103B2 76 years, female 242.5

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

372.1
Pig sample Sample description nTPM
Caudate
nTPM: 372.1
Samples: 4

Max nTPM: 420.6
Min nTPM: 288.1
Sample A Female 391.4
Sample B Female 388.1
Sample C Male 420.6
Sample D Male 288.1

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