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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1096.8 nTPM
HPA:915.2 nTPM
GTEx:1096.8 nTPM
FANTOM5:555.3 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA063339
Glandular cells High



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

915.2
overview
Male, age 65
Small intestine sample 232
nTPM: 1211.6
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 803.1
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 783.1
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 863

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1096.8
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 1096.8
Samples: 187

Max nTPM: 2216.3
Min nTPM: 601.7
Std nTPM: 303.3
Median nTPM: 1035.2
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 2216.3
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 2021.1
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 1950.5
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 1915.3
GTEX-14PK6-1626-SM-6871I 70-79 years, female 1870.6
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 1780.9
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 1704.2
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 1702.8
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 1674.3
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 1663.7
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 1644.7
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 1628.5
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 1614.2
GTEX-183FY-1626-SM-793D8 20-29 years, male 1592.0
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 1559.1
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 1554.2
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 1546.6
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 1510.3
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 1501.8
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 1500.4
GTEX-13O61-1326-SM-5KM31 60-69 years, male 1498.9
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 1493.4
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 1473.7
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 1469.8
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 1466.1
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 1456.0
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 1453.4
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 1446.2
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 1411.2
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 1403.2
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 1402.2
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 1393.7
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 1376.3
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 1372.9
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 1369.2
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 1365.0
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 1361.8
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 1360.1
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 1336.4
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 1319.1
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 1312.5
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 1298.8
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 1294.7
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 1290.2
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 1280.6
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 1279.7
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 1279.5
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 1268.4
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 1262.7
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 1259.0
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 1257.5
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 1250.1
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 1247.9
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 1247.5
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 1243.5
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 1243.1
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 1239.0
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 1225.3
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 1218.9
GTEX-14PKU-1626-SM-6871C 40-49 years, female 1217.5
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 1215.0
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 1173.4
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 1172.7
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 1172.4
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 1165.6
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 1162.2
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 1160.2
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 1149.5
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 1144.3
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 1139.3
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 1138.0
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 1135.9
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 1127.9
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 1122.2
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 1120.4
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 1114.1
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 1107.8
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 1107.3
GTEX-1C475-1426-SM-793CH 40-49 years, female 1106.5
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 1105.9
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 1102.9
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 1101.1
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 1093.2
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 1093.2
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 1092.3
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 1081.0
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 1075.9
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 1075.8
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 1074.5
GTEX-13113-1226-SM-5EGHT 60-69 years, female 1074.2
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 1061.3
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 1048.9
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 1042.5
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 1035.2
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 1031.3
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 1028.0
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 1023.9
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 1021.6
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 1001.8
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 995.8
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 987.5
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 986.5
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 985.2
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 983.9
GTEX-1192X-2526-SM-59868 50-59 years, male 975.3
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 972.1
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 971.8
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 970.8
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 969.8
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 969.0
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 968.3
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 961.7
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 961.7
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 960.5
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 948.5
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 946.2
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 942.9
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 939.3
GTEX-117YX-0326-SM-5GICL 50-59 years, male 928.2
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 928.2
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 924.3
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 921.8
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 921.0
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 920.2
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 916.7
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 910.2
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 905.5
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 901.0
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 897.8
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 892.6
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 891.9
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 889.2
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 888.5
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 885.4
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 882.8
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 881.8
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 881.1
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 880.3
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 876.3
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 875.2
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 865.8
GTEX-13111-1426-SM-5DUW3 50-59 years, male 859.5
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 859.2
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 853.5
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 853.3
GTEX-14PN3-2026-SM-68729 60-69 years, female 850.5
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 848.6
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 847.2
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 846.3
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 842.3
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 836.7
GTEX-1122O-1326-SM-5H11F 60-69 years, female 835.6
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 832.7
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 827.8
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 817.4
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 816.2
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 812.9
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 812.6
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 811.5
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 798.8
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 796.6
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 793.6
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 785.2
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 782.4
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 781.5
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 772.4
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 765.0
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 758.1
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 750.9
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 743.6
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 741.4
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 740.0
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 736.6
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 730.0
GTEX-144GM-1026-SM-79OKU 20-29 years, male 726.0
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 724.0
GTEX-YFCO-1326-SM-664NV 40-49 years, male 720.6
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 718.6
GTEX-111YS-1426-SM-5GID8 60-69 years, male 707.2
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 700.3
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 697.5
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 690.1
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 666.4
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 663.1
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 647.2
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 636.4
GTEX-ZTSS-0926-SM-59865 40-49 years, male 601.7
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

555.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 555.3
FF:10024-101D6 15,40,85 years, mixed 555.3

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