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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:896.7 nTPM
HPA Brain:501.6 nTPM
GTEx:896.7 nTPM
FANTOM5:361.6 Scaled Tags Per Million
Pig:264.1 nTPM
Mouse:764.3 nTPM
Allen mouse:7.3 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

501.6
Sample id Sample description nTPM
Amygdala
nTPM: 482.8
2695 Female, age 67, right hemisphere 580.1
2514 Male, age 75, right hemisphere 496.4
2517 Female, age 94, left hemisphere 462.0
2814 Male, age 76, right hemisphere 445.1
1987 Female, age 91, left hemisphere 430.2
Basal amygdala
nTPM: 437.1
2827 Female, age 67, right hemisphere 588.9
2609 Male, age 75, right hemisphere 527.7
2110 Male, age 80, left hemisphere 410.3
2685 Female, age 94, left hemisphere 400.2
2243 Female, age 91, right hemisphere 350.0
1955 Male, age 76, both hemispheres 345.5
Central amygdala
nTPM: 479.1
2826 Female, age 94, left hemisphere 761.5
2515 Male, age 75, right hemisphere 518.7
1905 Male, age 76, both hemispheres 403.3
2239 Male, age 80, left hemisphere 368.9
2701 Female, age 91, right hemisphere 343.4
Corticomedial amygdala
nTPM: 389.5
2428 Male, age 75, right hemisphere 478.2
2829 Male, age 80, left hemisphere 428.5
2535 Female, age 67, right hemisphere 418.7
2429 Female, age 94, left hemisphere 363.5
2242 Female, age 91, right hemisphere 338.8
2240 Male, age 76, both hemispheres 309.0
Lateral amygdala
nTPM: 501.6
2830 Female, age 67, right hemisphere 750.7
2516 Male, age 75, right hemisphere 603.8
2534 Female, age 94, left hemisphere 537.3
2256 Male, age 80, left hemisphere 415.5
2255 Female, age 91, right hemisphere 355.9
1883 Male, age 76, both hemispheres 346.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

896.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 896.7
Samples: 152

Max nTPM: 2774.6
Min nTPM: 426.4
Std nTPM: 339.5
Median nTPM: 828.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 2774.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 2050.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 1930.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1906.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1876.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 1862.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 1632.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1616.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 1484.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 1365.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 1352.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 1329.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 1315.1
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 1305.4
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 1297.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1261.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1255.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 1200.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 1193.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 1175.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 1175.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 1162.3
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 1155.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 1152.7
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 1136.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1128.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1122.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1120.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 1096.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 1094.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 1091.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 1090.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 1083.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 1044.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 1033.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 1026.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 1011.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 1011.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 1006.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 1004.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 1001.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 1001.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 1000.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 1000.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 981.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 975.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 971.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 959.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 937.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 936.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 932.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 927.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 920.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 911.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 909.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 907.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 905.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 902.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 897.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 894.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 892.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 891.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 889.0
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 867.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 863.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 860.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 856.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 855.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 855.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 852.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 852.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 850.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 845.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 838.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 836.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 832.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 824.5
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 820.1
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 814.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 813.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 809.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 809.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 809.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 805.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 803.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 802.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 796.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 794.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 794.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 792.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 783.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 760.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 759.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 759.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 747.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 743.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 743.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 731.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 731.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 730.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 728.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 726.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 714.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 706.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 701.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 698.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 688.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 686.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 685.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 681.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 680.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 678.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 674.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 674.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 668.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 665.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 660.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 659.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 655.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 653.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 643.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 639.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 639.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 635.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 631.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 630.0
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 628.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 627.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 627.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 626.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 621.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 619.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 606.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 605.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 601.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 576.8
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 575.3
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 573.6
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 563.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 561.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 555.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 533.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 532.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 531.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 523.6
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 520.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 505.6
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 489.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 478.4
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 475.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 469.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 426.4
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

361.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 361.6
FF:10151-102I7 76 years, female 361.6

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

264.1
Pig sample Sample description nTPM
Amygdala
nTPM: 264.1
Samples: 4

Max nTPM: 340.0
Min nTPM: 162.2
Sample A Female 340.0
Sample B Female 290.2
Sample C Male 264.0
Sample D Male 162.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

764.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 764.3
Samples: 4

Max nTPM: 825.6
Min nTPM: 716.1
Sample A Male 716.1
Sample B Male 782.0
Sample C Female 825.6
Sample D Female 733.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

7.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 7.3
74580990 Antisense, RP_060215_02_C09, Mouse strain C57BL/6J (56 days, male) 7.3

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