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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:741.1 nTPM
HPA Brain:586.6 nTPM
GTEx:741.1 nTPM
FANTOM5:356.0 Scaled Tags Per Million
Pig:396.4 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

586.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 484.3
1981 Female, age 72, midline 597.8
2565 Male, age 75, midline 567.4
2048 Male, age 55, midline 431.6
2194 Female, age 79, both hemispheres 429.0
2816 Male, age 47, midline 395.9
Cervical spinal cord, dorsal horn
nTPM: 482.7
2173 Female, age 72, unknown 625.5
2069 Male, age 47, both hemispheres 561.1
2296 Male, age 66, both hemispheres 551.9
1877 Male, age 55, unknown 471.3
2297 Male, age 75, both hemispheres 357.3
2721 Male, age 90, both hemispheres 329.2
Cervical spinal cord, ventral horn
nTPM: 586.6
2480 Male, age 75, both hemispheres 757.5
2809 Male, age 90, both hemispheres 751.2
2098 Female, age 72, unknown 665.2
2295 Male, age 66, both hemispheres 513.9
2068 Male, age 55, unknown 482.8
2820 Female, age 79, both hemispheres 349.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

741.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 741.1
Samples: 159

Max nTPM: 1244.0
Min nTPM: 230.6
Std nTPM: 198.9
Median nTPM: 708.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 1244.0
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 1241.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 1195.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 1195.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 1167.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 1161.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 1154.5
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 1133.9
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 1131.7
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 1121.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 1078.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 1077.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 1066.8
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 1064.5
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 1059.7
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 1055.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 1041.6
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 1038.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 1030.6
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 1013.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 1005.6
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 971.6
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 970.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 964.3
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 962.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 947.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 943.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 922.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 921.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 917.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 916.0
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 909.6
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 906.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 902.4
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 895.6
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 885.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 884.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 871.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 865.9
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 861.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 854.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 853.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 843.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 841.3
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 837.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 835.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 829.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 826.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 825.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 825.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 814.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 810.8
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 805.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 804.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 799.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 796.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 791.9
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 790.8
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 790.7
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 777.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 772.1
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 764.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 763.4
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 757.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 756.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 754.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 754.0
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 736.4
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 733.5
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 733.3
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 732.1
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 728.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 727.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 726.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 719.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 714.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 713.9
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 713.0
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 708.9
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 708.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 708.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 704.9
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 701.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 699.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 698.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 695.8
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 689.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 689.0
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 688.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 684.4
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 676.9
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 671.7
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 666.9
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 664.9
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 658.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 656.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 652.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 651.2
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 650.0
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 648.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 645.9
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 644.5
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 642.9
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 642.1
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 641.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 637.2
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 632.2
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 631.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 629.2
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 626.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 626.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 621.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 617.7
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 613.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 608.2
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 606.6
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 605.7
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 602.8
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 602.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 598.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 596.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 595.7
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 594.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 589.7
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 588.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 584.4
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 584.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 577.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 575.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 574.5
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 573.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 570.0
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 566.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 554.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 554.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 535.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 528.6
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 527.6
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 526.2
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 525.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 525.0
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 523.9
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 520.1
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 514.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 509.2
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 502.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 501.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 490.0
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 484.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 482.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 478.4
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 473.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 461.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 451.2
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 417.7
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 410.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 382.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 352.4
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 230.6
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

356.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 356.0
FF:10181-103D1 60 years, female 381.3
FF:10159-103A6 76 years, female 330.8

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

396.4
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 396.4
Samples: 4

Max nTPM: 548.2
Min nTPM: 308.7
Sample A Female 314.4
Sample B Female 414.3
Sample C Male 548.2
Sample D Male 308.7
Ventral spinal cord
nTPM: 366.8
Samples: 4

Max nTPM: 435.0
Min nTPM: 304.7
Sample A Female 304.7
Sample B Female 382.2
Sample C Male 435.0
Sample D Male 345.4

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