We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
ALDOA
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • ALDOA
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:546.9 nTPM
FANTOM5:1052.7 Scaled Tags Per Million
Pig:811.8 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA004177Antibody CAB006252
Glial cells Not detectedLow
Neuronal cells -High




CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

546.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 546.9
Samples: 246

Max nTPM: 957.6
Min nTPM: 279.4
Std nTPM: 129.4
Median nTPM: 531.8
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 957.6
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 904.2
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 893.7
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 881.2
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 870.2
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 842.9
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 837.9
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 818.3
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 807.2
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 804.5
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 789.4
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 781.0
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 780.1
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 775.3
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 765.4
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 765.2
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 761.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 761.1
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 749.4
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 734.4
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 733.0
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 724.4
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 724.2
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 718.1
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 717.7
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 714.8
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 712.3
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 709.6
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 706.1
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 702.4
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 699.6
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 697.5
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 696.5
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 695.8
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 693.2
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 691.3
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 687.9
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 687.1
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 679.4
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 679.3
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 671.8
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 670.4
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 668.2
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 663.2
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 662.1
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 660.3
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 658.0
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 655.9
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 647.9
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 646.9
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 646.8
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 645.1
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 643.6
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 641.5
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 640.9
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 639.5
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 636.0
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 635.4
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 633.9
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 632.5
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 631.1
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 628.7
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 626.6
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 625.7
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 623.0
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 621.9
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 621.6
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 621.0
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 619.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 618.3
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 618.0
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 615.1
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 614.0
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 611.0
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 608.2
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 606.2
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 605.9
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 600.5
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 600.2
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 596.7
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 595.3
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 593.3
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 593.2
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 592.2
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 590.9
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 589.2
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 586.4
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 585.8
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 584.2
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 582.7
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 580.7
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 578.0
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 574.4
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 573.6
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 571.4
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 568.0
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 567.1
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 566.4
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 564.8
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 563.0
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 560.5
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 560.4
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 560.0
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 559.8
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 557.0
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 556.0
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 555.0
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 554.7
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 554.7
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 554.3
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 553.9
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 552.2
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 551.8
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 551.2
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 545.9
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 541.0
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 539.8
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 539.3
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 539.0
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 534.3
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 532.6
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 532.2
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 532.1
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 531.4
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 530.7
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 530.3
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 529.2
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 529.1
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 525.7
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 525.0
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 524.1
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 522.9
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 522.5
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 521.7
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 521.3
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 520.2
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 518.4
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 516.9
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 516.3
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 512.1
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 511.8
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 509.6
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 509.3
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 509.0
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 507.5
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 507.0
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 504.4
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 503.4
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 501.9
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 500.4
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 500.2
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 499.1
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 497.4
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 497.3
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 497.1
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 493.5
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 492.2
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 487.6
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 487.1
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 487.0
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 486.6
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 486.2
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 485.9
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 485.6
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 482.6
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 480.9
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 479.9
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 479.0
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 478.2
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 478.2
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 477.2
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 475.5
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 475.2
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 475.1
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 473.1
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 472.9
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 471.9
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 470.9
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 470.8
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 466.8
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 461.9
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 461.0
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 458.9
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 457.0
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 456.0
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 455.4
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 454.2
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 454.1
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 447.6
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 446.4
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 446.1
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 441.8
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 441.5
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 441.1
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 439.9
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 439.5
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 439.1
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 438.7
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 430.6
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 429.1
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 426.8
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 425.8
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 423.3
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 421.6
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 419.3
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 415.2
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 414.9
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 414.4
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 412.9
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 412.4
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 404.9
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 403.6
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 403.6
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 403.2
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 403.1
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 401.9
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 401.8
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 400.6
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 397.7
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 396.5
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 394.6
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 392.4
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 390.9
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 388.7
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 388.6
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 387.3
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 380.2
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 379.7
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 375.9
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 373.7
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 371.6
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 362.3
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 361.1
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 355.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 343.4
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 336.7
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 334.9
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 326.5
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 326.2
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 325.0
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 316.9
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 297.2
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 295.2
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 288.7
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 283.8
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 279.4
Show allShow less

CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1052.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 1052.7
FF:10164-103B2 76 years, female 1052.7

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

811.8
Pig sample Sample description nTPM
Caudate
nTPM: 811.8
Samples: 4

Max nTPM: 1016.3
Min nTPM: 642.1
Sample A Female 642.1
Sample B Female 830.6
Sample C Male 1016.3
Sample D Male 758.3

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org