We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
ALDOA
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • ALDOA
TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:371.0 nTPM
HPA:371.0 nTPM
GTEx:325.3 nTPM
FANTOM5:804.5 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA004177Antibody CAB006252
Glandular cells Not detectedMedium



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

371.0
overview
Male, age 65
Small intestine sample 232
nTPM: 405
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 527.7
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 331.2
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 220

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

325.3
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 325.3
Samples: 187

Max nTPM: 1015.9
Min nTPM: 102.2
Std nTPM: 114.3
Median nTPM: 303.4
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 1015.9
GTEX-111YS-1426-SM-5GID8 60-69 years, male 695.2
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 609.4
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 605.5
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 597.7
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 558.8
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 539.0
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 522.8
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 512.8
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 509.0
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 499.0
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 497.5
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 496.6
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 490.7
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 489.0
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 480.0
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 469.9
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 468.8
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 463.1
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 456.6
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 454.3
GTEX-YFCO-1326-SM-664NV 40-49 years, male 449.9
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 448.0
GTEX-1122O-1326-SM-5H11F 60-69 years, female 447.1
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 444.2
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 442.5
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 442.0
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 436.8
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 431.7
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 427.4
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 424.9
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 418.3
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 418.1
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 417.8
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 417.7
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 417.4
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 416.2
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 414.1
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 412.5
GTEX-117YX-0326-SM-5GICL 50-59 years, male 411.1
GTEX-ZTSS-0926-SM-59865 40-49 years, male 407.5
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 405.1
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 404.5
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 400.1
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 397.9
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 397.5
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 393.8
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 390.9
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 386.6
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 385.1
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 383.6
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 383.4
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 381.6
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 381.6
GTEX-13111-1426-SM-5DUW3 50-59 years, male 381.5
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 375.8
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 373.0
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 369.2
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 367.9
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 367.7
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 367.5
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 367.5
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 364.9
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 362.2
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 359.7
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 355.4
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 352.1
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 348.1
GTEX-144GM-1026-SM-79OKU 20-29 years, male 343.5
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 343.1
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 342.1
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 337.6
GTEX-14PKU-1626-SM-6871C 40-49 years, female 336.1
GTEX-13113-1226-SM-5EGHT 60-69 years, female 334.1
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 332.3
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 328.3
GTEX-14PN3-2026-SM-68729 60-69 years, female 327.2
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 325.7
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 323.0
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 321.0
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 318.3
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 317.4
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 317.4
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 315.6
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 315.3
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 314.6
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 312.8
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 312.0
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 310.7
GTEX-14PK6-1626-SM-6871I 70-79 years, female 309.1
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 304.8
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 304.5
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 304.2
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 303.4
GTEX-1192X-2526-SM-59868 50-59 years, male 301.9
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 300.4
GTEX-1C475-1426-SM-793CH 40-49 years, female 300.0
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 299.3
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 296.5
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 294.4
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 293.7
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 293.0
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 291.6
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 291.1
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 290.8
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 289.5
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 289.0
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 287.9
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 287.0
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 285.9
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 284.2
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 283.7
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 282.1
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 281.4
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 281.0
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 278.3
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 276.2
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 275.7
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 273.0
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 272.3
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 272.1
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 269.1
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 267.1
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 264.8
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 264.0
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 260.2
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 260.0
GTEX-13O61-1326-SM-5KM31 60-69 years, male 258.6
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 258.0
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 257.2
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 255.6
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 254.8
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 249.7
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 249.6
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 249.0
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 248.1
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 247.8
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 246.0
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 245.1
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 243.9
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 239.8
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 239.6
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 237.9
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 235.7
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 232.7
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 232.3
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 229.4
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 229.4
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 229.0
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 228.0
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 226.7
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 226.6
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 222.4
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 221.1
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 220.5
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 220.3
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 218.9
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 217.9
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 217.6
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 216.4
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 215.8
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 215.6
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 214.0
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 213.2
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 212.7
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 209.9
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 209.2
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 202.2
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 202.1
GTEX-183FY-1626-SM-793D8 20-29 years, male 201.4
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 200.9
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 199.1
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 194.2
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 194.0
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 193.0
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 191.5
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 190.9
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 190.9
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 190.2
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 189.1
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 186.2
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 182.7
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 175.8
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 174.6
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 159.8
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 148.2
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 102.2
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

804.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 804.5
FF:10024-101D6 15,40,85 years, mixed 804.5

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org