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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: High
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:693.2 nTPM
FANTOM5:766.0 Scaled Tags Per Million
Pig:358.0 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA041344Antibody HPA049132Antibody CAB000362Antibody CAB005419
Glial cells Not detectedHighNot detectedLow
Neuronal cells LowMediumNot detectedNot detected








CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

693.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 693.2
Samples: 246

Max nTPM: 2905.1
Min nTPM: 389.8
Std nTPM: 278.2
Median nTPM: 613.0
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 2905.1
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 2060.2
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 2003.8
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 1704.8
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 1574.3
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 1523.9
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 1312.3
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 1278.5
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 1234.6
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 1225.9
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 1202.1
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 1201.2
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 1178.5
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 1177.7
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 1177.2
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 1140.7
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 1097.8
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 1083.8
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 1070.5
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 1065.4
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 1057.3
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 1002.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 941.5
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 936.6
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 933.3
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 931.2
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 923.0
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 901.0
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 900.7
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 889.0
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 879.1
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 876.6
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 861.2
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 858.2
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 845.0
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 843.7
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 840.8
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 840.1
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 833.4
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 832.9
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 830.5
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 827.0
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 824.8
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 822.2
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 819.8
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 816.2
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 815.7
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 813.1
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 811.4
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 809.3
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 800.0
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 799.2
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 795.1
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 790.3
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 773.7
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 770.1
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 769.9
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 768.9
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 753.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 752.6
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 752.4
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 752.2
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 747.8
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 743.5
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 740.4
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 739.2
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 738.6
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 737.7
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 733.5
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 732.5
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 727.2
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 719.4
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 716.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 715.1
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 714.2
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 713.0
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 711.2
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 709.5
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 707.8
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 704.3
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 703.7
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 698.3
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 696.3
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 693.5
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 691.5
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 688.7
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 686.0
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 684.9
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 684.4
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 681.9
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 679.7
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 678.3
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 673.1
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 670.7
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 669.4
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 669.0
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 668.6
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 664.4
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 661.4
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 660.4
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 660.3
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 659.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 654.1
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 654.0
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 653.4
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 653.2
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 651.2
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 648.3
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 648.1
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 645.5
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 644.7
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 643.0
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 637.9
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 636.5
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 636.1
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 633.3
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 631.2
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 624.3
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 622.0
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 621.4
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 619.7
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 614.4
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 613.7
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 612.3
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 612.1
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 612.0
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 608.5
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 608.0
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 606.9
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 606.8
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 605.2
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 605.0
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 604.6
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 603.8
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 603.8
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 600.6
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 600.2
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 600.0
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 598.8
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 596.1
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 595.3
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 594.8
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 594.6
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 593.2
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 592.0
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 590.8
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 589.3
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 586.7
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 585.4
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 584.6
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 584.3
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 583.7
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 581.4
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 579.8
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 579.6
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 578.9
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 576.8
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 575.6
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 575.0
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 573.9
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 572.2
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 568.6
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 568.4
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 567.9
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 566.6
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 565.7
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 565.7
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 565.5
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 564.5
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 563.4
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 555.5
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 553.5
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 552.0
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 551.7
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 548.8
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 547.9
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 547.9
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 547.8
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 544.9
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 541.8
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 540.3
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 539.0
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 538.3
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 538.3
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 537.5
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 536.7
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 536.6
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 533.5
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 531.3
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 530.6
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 529.8
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 528.3
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 527.6
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 524.8
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 522.7
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 521.1
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 520.3
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 519.1
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 516.9
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 513.9
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 512.9
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 512.1
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 509.3
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 508.9
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 508.0
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 507.5
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 505.8
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 505.8
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 505.7
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 505.6
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 503.5
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 502.1
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 501.4
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 500.6
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 499.7
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 494.7
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 494.4
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 493.5
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 489.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 487.2
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 486.9
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 486.1
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 483.7
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 478.1
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 474.9
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 472.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 471.4
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 471.2
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 469.1
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 468.4
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 468.3
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 467.0
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 466.1
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 465.2
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 463.0
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 451.7
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 438.1
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 436.2
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 435.8
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 429.8
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 429.0
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 423.6
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 423.0
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 422.6
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 405.9
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 389.8
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

766.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 766.0
FF:10164-103B2 76 years, female 766.0

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

358.0
Pig sample Sample description nTPM
Caudate
nTPM: 358.1
Samples: 4

Max nTPM: 429.6
Min nTPM: 305.9
Sample A Female 305.9
Sample B Female 362.4
Sample C Male 429.6
Sample D Male 334.3

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