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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1146.2 nTPM
GTEx:1146.2 nTPM
FANTOM5:2882.5 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA041344Antibody HPA049132Antibody CAB000362Antibody CAB005419
Squamous epithelial cells HighHighMediumMedium





VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1146.2
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 1146.2
Samples: 156

Max nTPM: 5948.1
Min nTPM: 444.5
Std nTPM: 628.3
Median nTPM: 963.4
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 5948.1
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 2419.2
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 2402.2
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 2390.5
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 2360.2
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 2325.9
GTEX-14PKU-1326-SM-6871B 40-49 years, female 2264.1
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 2227.9
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 2183.2
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 2169.6
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 2140.1
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 2120.9
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 2041.0
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 1989.6
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 1967.7
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 1914.6
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 1891.2
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 1878.9
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 1807.2
GTEX-S341-1226-SM-4AD5S 40-49 years, female 1781.2
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 1773.8
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 1768.8
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 1754.4
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 1721.1
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 1661.5
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 1609.4
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 1578.3
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 1574.4
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 1573.6
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 1554.8
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 1551.2
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 1526.1
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 1513.9
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 1499.4
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 1477.2
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 1468.8
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 1443.0
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 1439.2
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 1427.6
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 1418.5
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 1408.6
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 1408.2
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 1400.3
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 1397.3
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 1367.2
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 1357.0
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 1356.1
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 1329.1
GTEX-11I78-2026-SM-5987C 50-59 years, female 1328.6
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 1316.1
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 1277.4
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 1256.8
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 1228.1
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 1211.7
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 1206.6
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 1178.2
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 1170.4
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 1130.5
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 1125.9
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 1125.5
GTEX-16NPV-2526-SM-6M483 50-59 years, female 1103.0
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 1092.8
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 1091.2
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 1086.8
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 1084.3
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 1063.6
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 1039.8
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 1032.7
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 1027.6
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 1004.6
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 1001.7
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 989.5
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 988.4
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 986.4
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 985.3
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 982.2
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 965.4
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 964.7
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 962.2
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 955.1
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 949.4
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 933.4
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 930.0
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 928.8
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 926.2
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 920.1
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 919.4
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 911.0
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 907.4
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 905.5
GTEX-QCQG-1226-SM-48U23 50-59 years, female 901.8
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 895.3
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 894.7
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 893.5
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 886.2
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 885.6
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 879.5
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 875.7
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 865.1
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 854.7
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 854.4
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 849.1
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 848.5
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 843.4
GTEX-1C475-0526-SM-793AC 40-49 years, female 839.4
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 839.0
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 825.7
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 822.4
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 821.9
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 818.7
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 793.8
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 782.4
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 779.7
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 757.0
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 750.1
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 747.1
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 743.3
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 734.7
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 733.0
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 723.1
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 719.4
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 715.6
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 708.3
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 705.9
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 699.3
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 698.6
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 688.3
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 679.6
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 674.3
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 668.7
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 627.4
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 625.7
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 625.5
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 614.9
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 614.3
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 603.5
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 599.8
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 598.9
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 592.1
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 586.0
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 584.2
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 577.1
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 567.8
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 563.9
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 551.2
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 547.2
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 529.5
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 524.1
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 520.1
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 515.9
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 478.6
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 470.1
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 457.3
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 455.7
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 452.1
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 444.5
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

2882.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 2882.5
FF:10204-103F6 68 years, female 2882.5

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