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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:876.0 nTPM
HPA Brain:1028.8 nTPM
GTEx:876.0 nTPM
FANTOM5:1138.2 Scaled Tags Per Million
Pig:624.3 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1028.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 1012.0
1981 Female, age 72, midline 1323.9
2194 Female, age 79, both hemispheres 991.7
2048 Male, age 55, midline 986.3
2816 Male, age 47, midline 904.0
2565 Male, age 75, midline 854.2
Cervical spinal cord, dorsal horn
nTPM: 1028.8
2296 Male, age 66, both hemispheres 1331.7
2173 Female, age 72, unknown 1308.3
2069 Male, age 47, both hemispheres 1215.5
1877 Male, age 55, unknown 831.8
2721 Male, age 90, both hemispheres 758.0
2297 Male, age 75, both hemispheres 727.7
Cervical spinal cord, ventral horn
nTPM: 990.9
2098 Female, age 72, unknown 1674.5
2809 Male, age 90, both hemispheres 968.5
2068 Male, age 55, unknown 962.2
2295 Male, age 66, both hemispheres 882.9
2480 Male, age 75, both hemispheres 753.6
2820 Female, age 79, both hemispheres 703.5

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

876.0
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 876.0
Samples: 159

Max nTPM: 2534.6
Min nTPM: 451.9
Std nTPM: 353.2
Median nTPM: 775.2
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 2534.6
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 2352.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 1983.9
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 1960.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 1686.8
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 1656.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 1594.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 1578.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 1519.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 1494.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 1462.3
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 1448.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 1416.0
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 1399.8
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 1393.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 1373.6
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 1365.4
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 1346.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 1323.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 1308.8
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 1306.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 1233.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 1230.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 1223.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 1210.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 1194.2
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 1180.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 1132.4
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 1116.8
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 1109.6
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 1106.3
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 1084.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 1079.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 1078.3
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 1068.4
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 1058.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 1049.1
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 1046.4
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 1001.2
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 996.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 980.5
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 977.1
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 973.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 966.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 957.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 957.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 952.2
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 946.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 941.7
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 938.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 919.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 908.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 900.4
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 899.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 893.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 889.5
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 889.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 877.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 874.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 874.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 873.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 863.4
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 863.2
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 851.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 840.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 832.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 831.5
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 824.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 820.3
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 813.9
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 805.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 801.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 800.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 792.5
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 786.6
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 785.3
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 782.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 781.9
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 779.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 775.2
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 763.8
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 760.9
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 757.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 756.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 746.2
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 741.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 740.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 739.8
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 732.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 731.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 728.9
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 727.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 722.8
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 718.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 715.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 711.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 705.5
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 700.1
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 698.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 693.4
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 691.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 690.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 684.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 680.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 678.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 667.4
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 665.0
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 663.3
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 663.0
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 660.9
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 660.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 654.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 651.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 648.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 646.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 639.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 635.0
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 634.0
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 632.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 629.3
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 628.5
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 627.3
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 626.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 622.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 620.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 619.8
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 619.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 615.7
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 615.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 612.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 598.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 598.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 598.2
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 595.3
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 585.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 580.6
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 580.1
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 570.6
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 568.6
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 560.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 559.9
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 558.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 557.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 553.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 553.6
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 541.7
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 536.0
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 534.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 533.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 529.4
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 526.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 517.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 515.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 515.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 506.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 491.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 485.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 470.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 451.9
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1138.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 1138.2
FF:10159-103A6 76 years, female 1485.3
FF:10181-103D1 60 years, female 791.1

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

624.3
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 568.6
Samples: 4

Max nTPM: 804.8
Min nTPM: 437.1
Sample A Female 437.1
Sample B Female 514.8
Sample C Male 804.8
Sample D Male 517.6
Ventral spinal cord
nTPM: 624.3
Samples: 4

Max nTPM: 701.7
Min nTPM: 552.3
Sample A Female 552.3
Sample B Female 633.3
Sample C Male 701.7
Sample D Male 610.0

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