MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:241.6 nTPM
HPA Brain:377.9 nTPM
GTEx:241.6 nTPM
FANTOM5:406.3 Scaled Tags Per Million
Pig:105.4 nTPM
Mouse:50.4 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 377.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 330.2
1833 Male, age 53, unknown 349.9
1830 Male, age 51, unknown 349.0
2586 Male, age 75, left hemisphere 341.8
2411 Female, age 72, unknown 337.1
2666 Male, age 74, left hemisphere 334.4
1870 Female, age 42, unknown 327.7
2019 Male, age 18, unknown 322.3
2828 Female, age 72, unknown 317.6
2219 Male, age 76, both hemispheres 315.5
1827 Male, age 72, unknown 306.8
Dorsal raphe nucleus
nTPM: 310.1
2750 Male, age 76, both hemispheres 367.1
1828 Male, age 53, unknown 319.2
2047 Male, age 72, unknown 316.2
2016 Female, age 72, unknown 311.7
2298 Female, age 72, unknown 236.5
Inferior colliculus
nTPM: 279.4
1848 Female, age 42, unknown 298.1
1890 Male, age 53, unknown 292.7
2849 Male, age 72, unknown 283.7
2097 Female, age 72, unknown 243.1
Median raphe nucleus
nTPM: 337.4
2220 Male, age 76, midline 337.4
Periaquaductal grey, anterior
nTPM: 265.1
1947 Male, age 18, unknown 313.1
1795 Male, age 51, unknown 248.5
2502 Female, age 75, unknown 233.9
Periaquaductal grey, dorsal
nTPM: 278.3
2850 Male, age 76, both hemispheres 302.4
2464 Female, age 72, unknown 295.6
1831 Male, age 72, unknown 266.5
1840 Male, age 53, unknown 248.9
Periaquaductal grey, lateral
nTPM: 254.0
2140 Male, age 76, both hemispheres 278.8
2053 Male, age 18, unknown 245.9
2272 Male, age 74, both hemispheres 237.4
Pretectal area
nTPM: 276.4
1815 Male, age 53, unknown 320.1
2007 Male, age 72, unknown 292.2
1817 Female, age 42, unknown 286.2
2667 Female, age 75, unknown 278.9
1944 Female, age 72, unknown 277.1
2407 Male, age 75, both hemispheres 274.5
1816 Male, age 51, unknown 267.6
2825 Male, age 18, unknown 266.5
2316 Male, age 76, right hemisphere 265.8
2224 Female, age 72, unknown 257.7
2273 Male, age 74, both hemispheres 253.5
Red nucleus
nTPM: 361.5
2503 Female, age 72, unknown 413.3
2588 Male, age 74, left hemisphere 411.9
1865 Male, age 51, unknown 391.9
1821 Female, age 72, unknown 391.5
2823 Male, age 76, right hemisphere 368.3
1904 Male, age 53, unknown 364.2
1954 Female, age 42, unknown 353.6
2725 Female, age 75, unknown 351.8
2227 Male, age 72, unknown 348.1
2769 Male, age 72, unknown 339.8
2785 Male, age 18, unknown 323.3
2584 Male, age 75, left hemisphere 280.4
Substantia nigra
nTPM: 377.9
1916 Female, age 42, unknown 466.3
2699 Male, age 18, unknown 431.9
2409 Female, age 72, unknown 413.5
1851 Male, age 51, unknown 400.1
1941 Male, age 53, unknown 394.8
2241 Male, age 72, unknown 381.8
2583 Male, age 75, right hemisphere 355.5
2590 Female, age 75, unknown 338.5
1889 Female, age 72, unknown 326.7
2665 Male, age 74, both hemispheres 269.8
Superior colliculus
nTPM: 296.4
2668 Female, age 75, unknown 368.5
1913 Female, age 42, unknown 351.4
1995 Male, age 72, unknown 316.7
2587 Male, age 74, left hemisphere 307.7
1895 Male, age 76, right hemisphere 304.8
1839 Male, age 51, unknown 285.9
2087 Female, age 72, unknown 277.6
1796 Male, age 53, unknown 267.0
2261 Male, age 18, unknown 259.2
2664 Male, age 75, both hemispheres 225.0
Ventral tegmental area
nTPM: 344.9
2218 Male, age 76, both hemispheres 401.2
1915 Female, age 42, unknown 372.7
2410 Female, age 72, unknown 357.3
2223 Female, age 72, unknown 334.5
1942 Male, age 51, unknown 311.4
2021 Male, age 53, unknown 292.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 241.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 241.6
Samples: 139

Max nTPM: 557.4
Min nTPM: 116.1
Std nTPM: 54.8
Median nTPM: 234.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 557.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 417.1
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 389.8
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 382.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 382.3
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 365.2
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 353.6
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 329.3
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 319.6
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 305.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 305.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 406.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 406.3
FF:10158-103A5 76 years, female 406.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 105.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 105.4
Samples: 4

Max nTPM: 122.7
Min nTPM: 88.4
Sample A Female 97.6
Sample B Female 88.4
Sample C Male 113.0
Sample D Male 122.7
Midbrain
nTPM: 94.7
Samples: 4

Max nTPM: 107.3
Min nTPM: 83.3
Sample A Female 104.3
Sample B Female 83.7
Sample C Male 107.3
Sample D Male 83.3
Periaqueductal gray
nTPM: 78.2
Samples: 3

Max nTPM: 82.5
Min nTPM: 74.2
Sample B Female 77.9
Sample C Male 82.5
Sample D Male 74.2
Superior colliculi
nTPM: 86.2
Samples: 4

Max nTPM: 111.9
Min nTPM: 59.2
Sample A Female 75.6
Sample B Female 59.2
Sample C Male 111.9
Sample D Male 98.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 50.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 50.4
Samples: 4

Max nTPM: 57.0
Min nTPM: 35.0
Sample A Male 35.0
Sample B Male 55.2
Sample C Female 54.5
Sample D Female 57.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
70238943 Antisense, RP_050526_04_E02, Mouse strain C57BL/6J (56 days, male) 0.2
73834445 Antisense, RP_051212_03_H11, Mouse strain C57BL/6J (56 days, male) 0.0

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