We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
DST
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • DST
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:205.0 nTPM
HPA Brain:290.0 nTPM
GTEx:205.0 nTPM
FANTOM5:463.7 Scaled Tags Per Million
Pig:107.3 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

290.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 290.0
2048 Male, age 55, midline 329.1
2816 Male, age 47, midline 318.2
2194 Female, age 79, both hemispheres 300.8
1981 Female, age 72, midline 297.0
2565 Male, age 75, midline 204.9
Cervical spinal cord, dorsal horn
nTPM: 267.3
2296 Male, age 66, both hemispheres 421.1
2173 Female, age 72, unknown 360.1
2069 Male, age 47, both hemispheres 249.8
1877 Male, age 55, unknown 229.0
2721 Male, age 90, both hemispheres 174.3
2297 Male, age 75, both hemispheres 169.3
Cervical spinal cord, ventral horn
nTPM: 288.7
2820 Female, age 79, both hemispheres 333.2
2098 Female, age 72, unknown 312.2
2068 Male, age 55, unknown 303.6
2809 Male, age 90, both hemispheres 285.6
2480 Male, age 75, both hemispheres 266.2
2295 Male, age 66, both hemispheres 231.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

205.0
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 205.0
Samples: 159

Max nTPM: 377.5
Min nTPM: 117.0
Std nTPM: 47.2
Median nTPM: 203.4
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 377.5
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 358.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 330.3
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 320.4
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 319.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 297.3
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 297.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 292.5
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 288.9
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 273.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 270.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 267.8
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 266.4
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 265.8
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 264.8
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 259.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 257.4
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 255.4
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 254.6
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 253.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 251.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 251.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 251.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 250.9
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 250.5
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 249.8
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 249.7
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 246.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 246.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 244.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 244.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 243.5
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 241.9
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 240.0
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 238.3
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 236.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 236.0
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 235.7
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 234.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 232.3
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 230.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 229.3
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 228.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 227.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 226.4
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 226.1
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 224.7
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 223.9
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 223.4
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 222.7
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 222.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 222.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 221.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 221.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 219.2
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 218.2
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 217.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 216.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 215.2
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 215.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 214.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 213.9
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 213.4
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 211.8
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 210.8
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 210.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 210.3
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 210.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 210.0
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 209.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 209.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 208.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 208.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 206.9
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 206.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 206.6
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 206.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 204.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 204.0
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 203.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 203.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 200.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 200.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 200.0
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 199.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 198.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 197.7
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 197.4
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 196.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 195.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 194.9
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 194.7
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 193.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 193.7
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 193.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 192.5
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 192.1
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 186.2
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 185.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 185.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 185.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 184.8
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 184.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 183.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 183.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 183.0
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 182.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 182.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 181.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 181.8
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 181.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 179.9
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 179.8
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 178.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 178.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 178.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 177.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 177.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 176.8
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 174.6
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 173.5
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 173.2
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 172.6
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 171.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 170.8
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 170.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 170.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 169.8
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 169.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 169.3
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 166.6
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 165.8
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 164.6
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 160.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 160.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 158.6
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 157.4
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 155.3
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 152.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 151.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 150.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 147.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 146.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 146.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 145.1
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 141.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 135.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 133.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 133.5
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 132.8
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 126.7
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 123.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 120.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 120.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 119.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 119.4
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 118.0
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 117.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 117.0
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

463.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 463.7
FF:10181-103D1 60 years, female 483.4
FF:10159-103A6 76 years, female 443.9

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

107.3
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 94.0
Samples: 4

Max nTPM: 106.4
Min nTPM: 73.7
Sample A Female 104.6
Sample B Female 91.3
Sample C Male 73.7
Sample D Male 106.4
Ventral spinal cord
nTPM: 107.3
Samples: 4

Max nTPM: 122.7
Min nTPM: 98.8
Sample A Female 122.7
Sample B Female 103.3
Sample C Male 98.8
Sample D Male 104.4

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org