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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:117.7 nTPM
HPA Brain:200.4 nTPM
GTEx:117.7 nTPM
FANTOM5:179.2 Scaled Tags Per Million
Pig:64.1 nTPM
Mouse:21.5 nTPM
Allen mouse:0.5 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

200.4
Sample id Sample description nTPM
Amygdala
nTPM: 200.4
1987 Female, age 91, left hemisphere 274.5
2695 Female, age 67, right hemisphere 263.3
2814 Male, age 76, right hemisphere 176.0
2517 Female, age 94, left hemisphere 155.4
2514 Male, age 75, right hemisphere 132.7
Basal amygdala
nTPM: 130.4
2609 Male, age 75, right hemisphere 179.7
1955 Male, age 76, both hemispheres 145.0
2110 Male, age 80, left hemisphere 143.2
2243 Female, age 91, right hemisphere 139.4
2685 Female, age 94, left hemisphere 100.6
2827 Female, age 67, right hemisphere 74.4
Central amygdala
nTPM: 167.2
2515 Male, age 75, right hemisphere 233.9
1905 Male, age 76, both hemispheres 165.8
2826 Female, age 94, left hemisphere 158.6
2701 Female, age 91, right hemisphere 140.6
2239 Male, age 80, left hemisphere 137.0
Corticomedial amygdala
nTPM: 128.2
2428 Male, age 75, right hemisphere 176.5
2242 Female, age 91, right hemisphere 148.3
2240 Male, age 76, both hemispheres 141.3
2829 Male, age 80, left hemisphere 136.0
2429 Female, age 94, left hemisphere 84.7
2535 Female, age 67, right hemisphere 82.8
Lateral amygdala
nTPM: 137.0
2256 Male, age 80, left hemisphere 174.8
2516 Male, age 75, right hemisphere 169.5
2255 Female, age 91, right hemisphere 135.4
1883 Male, age 76, both hemispheres 135.0
2534 Female, age 94, left hemisphere 119.0
2830 Female, age 67, right hemisphere 88.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

117.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 117.7
Samples: 152

Max nTPM: 415.2
Min nTPM: 25.7
Std nTPM: 59.2
Median nTPM: 104.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 415.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 380.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 297.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 286.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 274.9
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 263.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 261.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 205.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 199.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 197.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 191.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 188.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 185.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 185.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 185.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 182.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 180.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 168.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 166.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 165.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 163.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 161.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 159.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 157.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 156.7
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 156.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 155.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 154.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 154.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 154.0
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 153.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 153.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 153.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 151.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 148.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 147.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 145.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 145.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 144.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 144.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 143.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 142.9
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 142.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 140.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 135.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 135.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 134.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 132.4
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 130.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 129.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 128.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 126.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 126.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 126.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 126.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 125.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 124.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 123.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 121.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 121.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 120.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 120.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 119.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 116.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 116.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 116.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 114.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 112.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 112.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 111.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 110.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 109.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 108.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 107.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 107.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 105.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 104.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 103.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 103.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 102.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 101.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 100.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 99.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 99.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 99.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 99.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 98.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 98.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 97.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 95.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 95.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 95.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 95.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 93.8
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 93.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 93.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 92.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 91.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 90.6
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 90.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 89.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 89.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 89.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 88.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 87.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 87.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 86.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 86.6
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 85.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 85.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 84.3
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 81.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 81.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 80.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 78.5
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 78.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 78.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 77.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 77.2
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 74.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 74.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 73.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 72.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 72.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 72.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 69.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 69.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 69.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 68.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 67.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 66.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 65.2
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 65.0
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 61.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 60.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 59.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 56.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 55.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 54.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 52.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 52.5
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 50.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 50.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 47.8
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 47.6
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 47.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 45.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 41.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 41.0
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 36.2
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 33.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 25.7
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

179.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 179.2
FF:10151-102I7 76 years, female 179.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

64.1
Pig sample Sample description nTPM
Amygdala
nTPM: 64.1
Samples: 4

Max nTPM: 70.4
Min nTPM: 57.1
Sample A Female 69.6
Sample B Female 70.4
Sample C Male 59.4
Sample D Male 57.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

21.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 21.5
Samples: 4

Max nTPM: 24.2
Min nTPM: 19.0
Sample A Male 20.7
Sample B Male 19.0
Sample C Female 22.2
Sample D Female 24.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.5
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.5
68302203 Antisense, RP_041130_02_D06, Mouse strain C57BL/6J (56 days, male) 1.5
77454961 Antisense, RP_070129_01_E04, Mouse strain C57BL/6J (56 days, male) 0.1
77866850 Antisense, RP_070129_01_E04, Mouse strain C57BL/6J (56 days, male) 0.1
1181 Antisense, RP_Baylor_103301, Mouse strain C57BL/6J (56 days, male) 0.0

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