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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:179.2 nTPM
GTEx:179.2 nTPM
FANTOM5:60.9 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA035097Antibody CAB010753
Squamous epithelial cells MediumHigh



VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

179.2
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 179.2
Samples: 156

Max nTPM: 1168.8
Min nTPM: 18.5
Std nTPM: 141.9
Median nTPM: 145.3
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 1168.8
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 569.4
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 491.5
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 486.6
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 448.2
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 443.7
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 416.1
GTEX-14PKU-1326-SM-6871B 40-49 years, female 407.3
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 405.4
GTEX-11I78-2026-SM-5987C 50-59 years, female 380.8
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 374.4
GTEX-S341-1226-SM-4AD5S 40-49 years, female 365.5
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 358.2
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 353.5
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 342.7
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 336.1
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 334.6
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 329.6
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 324.2
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 313.7
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 312.4
GTEX-1C475-0526-SM-793AC 40-49 years, female 312.2
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 311.6
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 311.1
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 308.2
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 304.2
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 302.5
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 301.6
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 295.4
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 295.2
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 291.3
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 288.8
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 283.0
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 282.2
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 277.5
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 270.0
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 269.3
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 263.9
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 262.9
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 257.0
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 248.0
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 246.3
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 245.9
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 237.7
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 237.1
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 236.7
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 236.3
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 235.6
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 232.1
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 228.1
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 225.1
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 222.9
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 222.9
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 221.2
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 213.3
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 200.4
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 196.9
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 193.1
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 192.2
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 189.1
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 183.1
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 183.0
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 180.8
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 180.6
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 180.1
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 178.4
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 176.4
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 172.1
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 167.4
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 166.5
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 162.2
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 162.2
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 158.7
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 157.7
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 156.3
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 155.8
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 153.5
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 152.6
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 138.0
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 137.7
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 136.6
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 135.1
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 132.9
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 129.5
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 126.0
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 123.5
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 122.5
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 121.9
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 121.7
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 121.1
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 119.8
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 119.2
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 117.3
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 117.1
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 113.7
GTEX-16NPV-2526-SM-6M483 50-59 years, female 113.3
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 109.5
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 107.5
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 107.4
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 104.7
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 104.2
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 101.9
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 95.7
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 95.0
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 94.7
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 88.7
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 87.9
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 85.3
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 85.0
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 84.1
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 80.9
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 79.9
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 74.6
GTEX-QCQG-1226-SM-48U23 50-59 years, female 73.7
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 73.5
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 71.8
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 71.3
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 69.5
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 69.4
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 67.9
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 67.7
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 66.2
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 66.1
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 65.2
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 64.5
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 64.1
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 62.8
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 62.5
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 60.1
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 60.0
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 59.5
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 57.2
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 56.4
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 55.6
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 52.9
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 52.9
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 52.3
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 48.9
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 47.2
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 46.6
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 44.7
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 41.5
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 41.1
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 40.8
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 38.8
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 34.6
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 33.5
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 33.4
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 31.5
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 30.4
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 29.1
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 28.7
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 26.9
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 22.3
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 19.8
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 18.5
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

60.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 60.9
FF:10204-103F6 68 years, female 60.9

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