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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
408.7
Sample id
Sample description
nTPM
Amygdala nTPM: 321.8
1987
Female, age 91, left hemisphere
478.4
2814
Male, age 76, right hemisphere
472.5
2517
Female, age 94, left hemisphere
322.6
2514
Male, age 75, right hemisphere
183.7
2695
Female, age 67, right hemisphere
151.9
Basal amygdala nTPM: 351.4
2243
Female, age 91, right hemisphere
613.7
2110
Male, age 80, left hemisphere
514.0
2685
Female, age 94, left hemisphere
417.3
1955
Male, age 76, both hemispheres
370.5
2827
Female, age 67, right hemisphere
100.2
2609
Male, age 75, right hemisphere
92.9
Central amygdala nTPM: 303.2
2239
Male, age 80, left hemisphere
465.2
1905
Male, age 76, both hemispheres
454.4
2701
Female, age 91, right hemisphere
367.4
2826
Female, age 94, left hemisphere
144.0
2515
Male, age 75, right hemisphere
84.8
Corticomedial amygdala nTPM: 408.7
2829
Male, age 80, left hemisphere
598.2
2242
Female, age 91, right hemisphere
586.5
2429
Female, age 94, left hemisphere
455.7
2240
Male, age 76, both hemispheres
363.3
2535
Female, age 67, right hemisphere
356.4
2428
Male, age 75, right hemisphere
92.1
Lateral amygdala nTPM: 256.3
1883
Male, age 76, both hemispheres
539.6
2255
Female, age 91, right hemisphere
325.8
2534
Female, age 94, left hemisphere
276.9
2256
Male, age 80, left hemisphere
242.1
2516
Male, age 75, right hemisphere
96.8
2830
Female, age 67, right hemisphere
56.6
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
416.1
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 416.1
Samples: 152
Max nTPM: 2417.5
Min nTPM: 58.5
Std nTPM: 336.9
Median nTPM: 298.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
2417.5
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
1334.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
1280.9
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
1242.2
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
1232.6
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
1216.8
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
1102.7
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
1082.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
1052.0
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
1049.2
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
1032.3
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
996.4
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
906.2
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
901.5
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
881.9
GTEX-R55E-0011-R4A-SM-2TC5H
20-29 years, male
870.8
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
813.4
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
801.1
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
795.1
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
737.5
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
731.3
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
727.3
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
720.9
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
714.3
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
712.7
GTEX-T5JC-0011-R4A-SM-32PLT
20-29 years, male
695.1
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
682.1
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
676.5
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
644.1
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
635.3
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
628.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
609.5
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
606.8
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
603.7
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
592.1
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
582.8
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
577.2
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
571.5
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
568.8
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
567.7
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
559.0
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
547.4
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
516.8
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
514.7
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
499.4
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
482.5
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
476.8
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
473.4
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
472.7
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
460.1
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
456.9
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
444.6
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
433.9
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
425.9
GTEX-P44H-0011-R4A-SM-2XCEW
40-49 years, male
424.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
421.5
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
410.6
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
407.5
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
406.4
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
398.2
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
393.3
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
384.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
384.0
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
376.7
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
363.9
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
360.8
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
360.3
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
357.6
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
355.3
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
345.7
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
340.6
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
332.8
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
320.9
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
317.5
GTEX-Y8DK-0011-R4A-SM-EXUR1
60-69 years, male
303.3
GTEX-18464-0011-R4a-SM-7LG6T
50-59 years, male
299.4
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
296.8
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
290.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
279.7
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
278.7
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
278.4
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
277.4
GTEX-UTHO-0011-R4A-SM-3GIJP
60-69 years, male
277.1
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
276.6
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
272.9
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
271.9
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
267.0
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
263.1
GTEX-1JJEA-0011-R4a-SM-EXUTC
60-69 years, male
256.6
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
254.4
GTEX-1CB4J-0011-R4b-SM-9WG5P
60-69 years, male
253.4
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
249.2
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
247.3
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
242.3
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
241.0
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
238.3
GTEX-T6MN-0011-R4A-SM-32QPG
50-59 years, male
237.6
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
236.8
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
234.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
232.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
231.7
GTEX-P44G-0011-R4A-SM-2I3FB
30-39 years, male
230.9
GTEX-NL3H-0011-R4a-SM-2I3GK
60-69 years, male
223.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
221.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
214.3
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
212.4
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
211.8
GTEX-QDT8-0011-R4A-SM-32PKM
30-39 years, female
205.4
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
204.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
197.5
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
195.8
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
193.7
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
190.5
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
189.3
GTEX-N7MS-0011-R4a-SM-2HMKW
60-69 years, male
187.2
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
181.4
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
180.2
GTEX-QMR6-0011-R4A-SM-32PKU
50-59 years, male
177.4
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
176.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
173.3
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
169.5
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
164.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
157.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
146.9
GTEX-15DDE-0011-R4b-SM-7KULI
50-59 years, female
146.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
144.0
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
143.6
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
126.1
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
125.6
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
125.5
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
123.7
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
123.7
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
123.1
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
117.9
GTEX-1H2FU-0011-R4a-SM-CL551
60-69 years, female
117.3
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
116.4
GTEX-X4EP-0011-R4B-SM-3P627
60-69 years, female
115.0
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
102.8
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
102.5
GTEX-ZE9C-0011-R4a-SM-4WKH6
60-69 years, male
98.2
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
96.1
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
95.1
GTEX-183WM-0011-R4a-SM-7LG6S
70-79 years, female
93.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
92.8
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
87.5
GTEX-145MI-0011-R4b-SM-5PNZH
60-69 years, female
82.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS
60-69 years, male
81.7
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
77.1
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
75.7
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
74.0
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
67.0
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
58.5
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
806.1
Mouse sample
Sample description
nTPM
Amygdala nTPM: 806.2
Samples: 4
Max nTPM: 907.7
Min nTPM: 752.5
Sample A
Male
907.7
Sample B
Male
772.4
Sample C
Female
792.0
Sample D
Female
752.5
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
