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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1241.6
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 350.8
2188
Female, age 91, both hemispheres
387.0
1984
Male, age 76, both hemispheres
359.9
2301
Female, age 85, both hemispheres
340.6
2090
Male, age 80, both hemispheres
315.6
Dorsal cochlear nucleus nTPM: 340.1
2187
Female, age 91, both hemispheres
487.6
2058
Male, age 76, both hemispheres
463.6
2370
Male, age 61, both hemispheres
324.5
2378
Male, age 80, both hemispheres
238.6
2802
Male, age 74, right hemisphere
186.0
Dorsal tegmental nucleus nTPM: 390.0
2083
Male, age 80, both hemispheres
510.3
1936
Male, age 76, left hemisphere
396.6
2326
Male, age 74, both hemispheres
395.1
2358
Male, age 61, both hemispheres
258.1
Dorsolateral tegmental area nTPM: 466.2
2360
Male, age 74, both hemispheres
640.7
2654
Male, age 80, both hemispheres
503.3
2751
Female, age 85, both hemispheres
494.5
2141
Male, age 76, both hemispheres
434.8
2337
Male, age 61, both hemispheres
257.8
Kolliker-Fuse nucleus nTPM: 460.4
2163
Male, age 80, both hemispheres
750.7
2793
Female, age 91, left hemisphere
336.5
2315
Male, age 76, right hemisphere
294.2
Lateral lemniscal nuclei nTPM: 581.1
2169
Male, age 76, both hemispheres
717.4
2036
Male, age 80, both hemispheres
646.9
2453
Male, age 74, right hemisphere
634.6
2746
Female, age 85, left hemisphere
590.1
2320
Female, age 91, left hemisphere
316.7
Lateral parabrachial nucleus nTPM: 433.7
2139
Female, age 85, right hemisphere
663.6
2013
Male, age 80, both hemispheres
454.4
2790
Male, age 61, both hemispheres
436.4
2792
Male, age 76, both hemispheres
180.2
Lateral vestibular nucleus nTPM: 561.5
2184
Male, age 76, both hemispheres
748.3
2311
Male, age 80, both hemispheres
374.7
Locus coeruleus nTPM: 1241.6
2123
Female, age 91, both hemispheres
1923.6
2720
Male, age 74, both hemispheres
1775.4
2014
Male, age 55, unknown
1395.6
1980
Male, age 76, both hemispheres
1090.0
2317
Female, age 72, unknown
877.5
2788
Male, age 74, unknown
843.1
2162
Male, age 80, both hemispheres
786.3
Medial parabrachial nucleus nTPM: 470.3
2170
Female, age 91, both hemispheres
611.9
2156
Male, age 61, both hemispheres
470.1
2854
Male, age 80, both hemispheres
465.2
2786
Male, age 76, both hemispheres
407.7
2463
Female, age 85, right hemisphere
396.6
Medial periolivary nuclei nTPM: 592.8
2171
Female, age 85, both hemispheres
903.7
2063
Male, age 76, both hemispheres
846.7
2791
Male, age 74, right hemisphere
616.0
2081
Male, age 80, both hemispheres
356.3
2458
Female, age 91, both hemispheres
241.3
Motor facial nucleus nTPM: 572.1
2062
Male, age 76, both hemispheres
951.2
2365
Male, age 74, right hemisphere
762.7
2126
Male, age 61, both hemispheres
556.4
2327
Male, age 80, both hemispheres
481.2
2697
Female, age 85, both hemispheres
465.6
2795
Female, age 91, both hemispheres
215.3
Motor trigeminal nucleus nTPM: 472.2
2079
Male, age 80, both hemispheres
626.9
2309
Male, age 76, both hemispheres
465.3
2560
Male, age 74, both hemispheres
464.6
2335
Male, age 61, both hemispheres
456.7
2321
Female, age 91, both hemispheres
347.3
Nuclei of the trapezoid body nTPM: 746.5
2159
Male, age 61, both hemispheres
1176.5
2735
Female, age 85, both hemispheres
950.3
1983
Male, age 76, both hemispheres
832.9
2166
Male, age 80, both hemispheres
519.0
2368
Female, age 91, both hemispheres
253.8
Nucleus raphe magnus nTPM: 808.7
2160
Male, age 61, both hemispheres
1557.6
2455
Male, age 74, both hemispheres
1072.4
2172
Female, age 85, both hemispheres
880.6
2051
Male, age 76, both hemispheres
517.5
2328
Male, age 80, both hemispheres
503.2
2459
Female, age 91, both hemispheres
320.7
Paramedian reticular nucleus nTPM: 753.9
2057
Male, age 80, both hemispheres
938.4
2313
Male, age 61, both hemispheres
883.6
2050
Female, age 85, both hemispheres
757.5
2052
Male, age 76, both hemispheres
436.0
Pedunculopontine tegmental nucleus nTPM: 511.1
2334
Male, age 80, both hemispheres
622.3
1921
Female, age 85, both hemispheres
519.1
2338
Male, age 61, both hemispheres
391.7
Pontine nuclei nTPM: 785.2
2727
Male, age 61, right hemisphere
1582.1
2109
Female, age 72, unknown
846.3
1863
Male, age 55, unknown
833.8
2787
Female, age 85, both hemispheres
803.3
2454
Male, age 74, left hemisphere
737.7
1968
Male, age 76, left hemisphere
727.2
2115
Male, age 80, left hemisphere
407.7
2319
Female, age 91, both hemispheres
343.8
Pontine raphe nucleus nTPM: 667.5
2122
Female, age 85, midline
763.0
2853
Male, age 76, midline
572.0
Posteroventral cochlear nucleus nTPM: 382.0
2752
Female, age 85, both hemispheres
711.3
2070
Male, age 76, both hemispheres
507.6
2371
Male, age 61, both hemispheres
292.9
2341
Male, age 80, both hemispheres
215.6
2135
Female, age 91, both hemispheres
182.8
Principal sensory trigeminal nucleus nTPM: 750.0
2158
Male, age 61, both hemispheres
1333.2
2008
Male, age 80, left hemisphere
804.9
2324
Male, age 76, both hemispheres
561.8
2367
Female, age 91, left hemisphere
300.0
Reticular pontine nucleus, caudal nTPM: 501.7
2092
Male, age 76, both hemispheres
601.7
2332
Male, age 80, right hemisphere
592.4
2559
Male, age 74, both hemispheres
575.5
2457
Female, age 91, both hemispheres
237.0
Reticular pontine nucleus, oral nTPM: 557.2
2361
Male, age 74, both hemispheres
1026.3
2012
Female, age 85, both hemispheres
629.2
1939
Male, age 80, both hemispheres
469.4
2167
Male, age 76, both hemispheres
436.0
2366
Female, age 91, both hemispheres
225.1
Reticulotegmental nucleus nTPM: 487.4
2325
Male, age 76, both hemispheres
648.5
2452
Male, age 74, both hemispheres
479.8
2333
Male, age 80, both hemispheres
438.7
2322
Female, age 91, both hemispheres
382.7
Spinal trigeminal nucleus, oral nTPM: 534.4
2737
Female, age 85, both hemispheres
603.9
2164
Male, age 80, both hemispheres
588.2
1978
Male, age 76, both hemispheres
411.1
Subcoeruleus area nTPM: 522.1
2323
Female, age 91, left hemisphere
721.1
1958
Male, age 80, both hemispheres
573.0
2089
Male, age 76, left hemisphere
528.5
2451
Male, age 74, both hemispheres
419.0
2369
Female, age 85, left hemisphere
368.9
Superior olive nTPM: 555.9
2364
Male, age 74, right hemisphere
737.7
1875
Female, age 85, both hemispheres
725.8
2020
Male, age 76, both hemispheres
541.6
2329
Male, age 80, right hemisphere
446.0
2561
Female, age 91, both hemispheres
328.6
Ventral periolivary nuclei nTPM: 596.0
2130
Female, age 85, both hemispheres
804.0
2165
Male, age 80, both hemispheres
686.5
2023
Male, age 76, both hemispheres
478.5
2794
Female, age 91, left hemisphere
415.0
Ventrolateral tegmental area, A5 NE cell group nTPM: 490.1
2449
Male, age 74, both hemispheres
770.9
2359
Male, age 61, both hemispheres
536.4
1959
Male, age 76, both hemispheres
527.4
2840
Female, age 85, both hemispheres
483.9
2161
Male, age 80, both hemispheres
435.3
2456
Female, age 91, both hemispheres
186.9
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
955.2
Pig sample
Sample description
nTPM
Pons nTPM: 955.2
Samples: 4
Max nTPM: 1152.2
Min nTPM: 762.3
Sample A
Female
1152.2
Sample B
Female
762.3
Sample C
Male
1009.2
Sample D
Male
896.9
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
