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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:363.5 nTPM
HPA Brain:537.0 nTPM
GTEx:363.5 nTPM
FANTOM5:408.4 Scaled Tags Per Million
Pig:1118.7 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

537.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 477.2
2194 Female, age 79, both hemispheres 588.5
1981 Female, age 72, midline 502.7
2816 Male, age 47, midline 500.2
2565 Male, age 75, midline 473.8
2048 Male, age 55, midline 320.9
Cervical spinal cord, dorsal horn
nTPM: 537.0
2296 Male, age 66, both hemispheres 823.7
2173 Female, age 72, unknown 658.3
2297 Male, age 75, both hemispheres 522.2
2069 Male, age 47, both hemispheres 481.6
2721 Male, age 90, both hemispheres 416.1
1877 Male, age 55, unknown 320.0
Cervical spinal cord, ventral horn
nTPM: 408.9
2820 Female, age 79, both hemispheres 558.4
2068 Male, age 55, unknown 545.2
2480 Male, age 75, both hemispheres 507.5
2098 Female, age 72, unknown 346.3
2809 Male, age 90, both hemispheres 270.6
2295 Male, age 66, both hemispheres 225.2

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

363.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 363.5
Samples: 159

Max nTPM: 1135.6
Min nTPM: 103.9
Std nTPM: 163.1
Median nTPM: 343.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 1135.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 1030.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 759.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 731.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 714.2
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 686.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 678.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 676.2
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 669.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 667.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 651.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 621.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 618.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 609.1
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 605.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 604.9
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 577.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 571.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 568.4
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 561.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 555.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 550.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 543.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 514.5
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 497.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 488.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 487.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 484.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 475.3
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 472.4
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 469.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 468.0
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 465.7
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 461.9
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 456.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 451.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 440.8
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 437.5
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 434.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 425.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 422.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 422.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 422.0
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 415.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 414.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 411.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 408.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 408.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 405.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 405.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 403.3
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 400.6
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 398.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 392.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 386.0
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 380.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 380.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 380.0
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 379.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 379.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 379.2
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 376.3
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 371.7
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 368.9
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 365.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 365.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 365.2
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 364.0
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 361.7
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 360.7
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 360.6
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 360.1
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 358.6
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 356.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 353.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 349.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 348.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 347.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 344.7
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 343.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 341.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 337.5
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 334.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 334.4
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 334.2
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 326.2
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 322.1
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 322.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 317.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 308.4
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 308.4
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 305.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 305.0
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 298.4
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 298.1
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 294.7
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 294.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 290.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 287.9
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 287.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 286.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 286.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 284.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 282.1
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 281.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 278.7
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 278.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 276.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 271.9
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 271.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 270.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 264.0
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 263.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 263.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 260.7
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 259.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 259.4
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 253.4
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 251.8
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 250.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 248.9
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 248.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 246.9
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 245.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 242.6
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 239.4
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 238.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 236.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 232.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 232.4
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 229.9
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 229.6
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 224.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 221.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 221.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 214.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 208.7
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 208.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 207.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 204.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 197.6
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 196.0
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 193.3
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 191.6
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 191.3
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 182.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 170.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 168.3
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 163.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 158.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 152.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 145.4
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 143.5
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 139.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 138.4
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 138.1
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 136.7
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 134.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 103.9
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

408.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 408.4
FF:10181-103D1 60 years, female 489.9
FF:10159-103A6 76 years, female 326.8

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1118.7
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 771.2
Samples: 4

Max nTPM: 949.7
Min nTPM: 622.7
Sample A Female 949.7
Sample B Female 635.1
Sample C Male 622.7
Sample D Male 877.1
Ventral spinal cord
nTPM: 1118.7
Samples: 4

Max nTPM: 1249.0
Min nTPM: 1066.9
Sample A Female 1082.3
Sample B Female 1249.0
Sample C Male 1066.9
Sample D Male 1076.4

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