PONS AND MEDULLA - Expression summary
Mouse brain, Intensity
Medulla oblongatai 		66.619
Mouse brain, Intensity
Ponsi 		101.197
RNA expressioni
HPA Brain:1241.6 nTPM
FANTOM5:2156.7 Scaled Tags Per Million
Pig:955.2 nTPM
Mouse:532.0 nTPM
Allen mouse:17.8 Expression energy

MEDULLA OBLONGATA - Mouse brain profilei , antibody CAB079024
Medulla oblongata mean intensity 66.619
intensityi
FRONT BACK
Nucleus of the solitary tract 41.297
Raphe magnus nucleus 23.244
Cochlear nucleus 25.454
Lateral paragigantocellular nucleus 34.712
Raphe pallidus nucleus 40.908
Facial nucleus 39.313
Hypoglossal nucleus 27.988
Ambiguus nucleus 22.960
External cuneate nucleus 17.516
Inferior olivary nucleus 23.565
Raphe obscures nucleus 20.735
Dorsal motor nucleus of vagus 58.930
Barrington's nucleus -
Koelliker-fuse nucleus -
Motor tregiminal nucleus 29.125
Parabrachial nucleus 48.493
Principle sensory trigeminal nucleus 25.449
Locus coeruleus 85.339
Pontine nucleus 49.496
Vestibular nucleus 41.764
Pontine reticular nucleus, oral 19.137
Lateral lemniscus 9.695
Superior paraolivary nucleus 32.212

PONS AND MEDULLA - HPA Brain RNA-seq
Max subtype nTPMi 1241.6
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 350.8
2188 Female, age 91, both hemispheres 387.0
1984 Male, age 76, both hemispheres 359.9
2301 Female, age 85, both hemispheres 340.6
2090 Male, age 80, both hemispheres 315.6
Area postrema
nTPM: 195.8
2054 Male, age 76, both hemispheres 366.5
2799 Male, age 61, both hemispheres 136.8
2306 Male, age 80, both hemispheres 84.0
Dorsal cochlear nucleus
nTPM: 340.1
2187 Female, age 91, both hemispheres 487.6
2058 Male, age 76, both hemispheres 463.6
2370 Male, age 61, both hemispheres 324.5
2378 Male, age 80, both hemispheres 238.6
2802 Male, age 74, right hemisphere 186.0
Dorsal medullary reticular nucleus
nTPM: 527.7
2040 Female, age 85, both hemispheres 897.0
2088 Male, age 76, both hemispheres 373.8
2373 Male, age 61, both hemispheres 312.2
Dorsal motor vagal complex
nTPM: 462.0
2133 Female, age 91, both hemispheres 961.4
2844 Male, age 55, unknown 799.7
2000 Male, age 74, unknown 772.5
2813 Female, age 72, unknown 438.1
2807 Female, age 85, both hemispheres 244.5
2185 Male, age 76, both hemispheres 202.9
2797 Male, age 61, both hemispheres 155.8
2643 Male, age 74, both hemispheres 121.0
Dorsal tegmental nucleus
nTPM: 390.0
2083 Male, age 80, both hemispheres 510.3
1936 Male, age 76, left hemisphere 396.6
2326 Male, age 74, both hemispheres 395.1
2358 Male, age 61, both hemispheres 258.1
Dorsolateral tegmental area
nTPM: 466.2
2360 Male, age 74, both hemispheres 640.7
2654 Male, age 80, both hemispheres 503.3
2751 Female, age 85, both hemispheres 494.5
2141 Male, age 76, both hemispheres 434.8
2337 Male, age 61, both hemispheres 257.8
Gigantocellular reticular nuclei, medullary
nTPM: 469.3
2462 Male, age 74, both hemispheres 944.4
1876 Female, age 85, both hemispheres 508.1
2310 Male, age 80, both hemispheres 441.8
2022 Male, age 76, right hemisphere 385.8
2387 Female, age 91, both hemispheres 317.1
2314 Male, age 61, both hemispheres 218.8
Gigantocellular reticular nuclei, pars
nTPM: 496.5
2168 Male, age 76, both hemispheres 757.7
2084 Female, age 85, both hemispheres 696.3
2336 Male, age 61, both hemispheres 416.3
2706 Male, age 80, both hemispheres 319.0
2330 Male, age 80, both hemispheres 293.2
Inferior olive
nTPM: 153.9
2085 Female, age 85, both hemispheres 275.8
2178 Male, age 61, both hemispheres 159.1
2628 Female, age 91, both hemispheres 149.1
2563 Male, age 74, both hemispheres 100.1
2379 Male, age 80, both hemispheres 85.3
Kolliker-Fuse nucleus
nTPM: 460.4
2163 Male, age 80, both hemispheres 750.7
2793 Female, age 91, left hemisphere 336.5
2315 Male, age 76, right hemisphere 294.2
Lateral lemniscal nuclei
nTPM: 581.1
2169 Male, age 76, both hemispheres 717.4
2036 Male, age 80, both hemispheres 646.9
2453 Male, age 74, right hemisphere 634.6
2746 Female, age 85, left hemisphere 590.1
2320 Female, age 91, left hemisphere 316.7
Lateral medullary reticular nucleus
nTPM: 445.1
2305 Male, age 74, both hemispheres 766.4
2044 Male, age 76, both hemispheres 742.1
2190 Female, age 85, both hemispheres 378.2
2852 Male, age 80, both hemispheres 317.2
2804 Female, age 91, both hemispheres 263.2
2374 Male, age 61, both hemispheres 203.8
Lateral parabrachial nucleus
nTPM: 433.7
2139 Female, age 85, right hemisphere 663.6
2013 Male, age 80, both hemispheres 454.4
2790 Male, age 61, both hemispheres 436.4
2792 Male, age 76, both hemispheres 180.2
Lateral vestibular nucleus
nTPM: 561.5
2184 Male, age 76, both hemispheres 748.3
2311 Male, age 80, both hemispheres 374.7
Locus coeruleus
nTPM: 1241.6
2123 Female, age 91, both hemispheres 1923.6
2720 Male, age 74, both hemispheres 1775.4
2014 Male, age 55, unknown 1395.6
1980 Male, age 76, both hemispheres 1090.0
2317 Female, age 72, unknown 877.5
2788 Male, age 74, unknown 843.1
2162 Male, age 80, both hemispheres 786.3
Medial olivary nucleus
nTPM: 205.8
1962 Male, age 76, both hemispheres 237.6
1943 Male, age 61, both hemispheres 222.8
2851 Male, age 80, both hemispheres 201.1
2138 Female, age 91, both hemispheres 161.7
Medial parabrachial nucleus
nTPM: 470.3
2170 Female, age 91, both hemispheres 611.9
2156 Male, age 61, both hemispheres 470.1
2854 Male, age 80, both hemispheres 465.2
2786 Male, age 76, both hemispheres 407.7
2463 Female, age 85, right hemisphere 396.6
Medial periolivary nuclei
nTPM: 592.8
2171 Female, age 85, both hemispheres 903.7
2063 Male, age 76, both hemispheres 846.7
2791 Male, age 74, right hemisphere 616.0
2081 Male, age 80, both hemispheres 356.3
2458 Female, age 91, both hemispheres 241.3
Medial vestibular nucleus
nTPM: 722.6
2801 Male, age 74, both hemispheres 1056.8
2134 Male, age 76, both hemispheres 895.8
2093 Male, age 80, both hemispheres 668.4
2743 Female, age 85, both hemispheres 663.5
2803 Female, age 91, both hemispheres 626.0
2624 Male, age 61, both hemispheres 425.1
Motor facial nucleus
nTPM: 572.1
2062 Male, age 76, both hemispheres 951.2
2365 Male, age 74, right hemisphere 762.7
2126 Male, age 61, both hemispheres 556.4
2327 Male, age 80, both hemispheres 481.2
2697 Female, age 85, both hemispheres 465.6
2795 Female, age 91, both hemispheres 215.3
Motor hypoglossal nucleus
nTPM: 606.0
2125 Female, age 91, both hemispheres 814.2
2132 Female, age 85, both hemispheres 730.4
2461 Male, age 61, both hemispheres 544.3
2277 Male, age 76, both hemispheres 472.4
2182 Male, age 80, both hemispheres 468.7
Motor trigeminal nucleus
nTPM: 472.2
2079 Male, age 80, both hemispheres 626.9
2309 Male, age 76, both hemispheres 465.3
2560 Male, age 74, both hemispheres 464.6
2335 Male, age 61, both hemispheres 456.7
2321 Female, age 91, both hemispheres 347.3
Nuclei of the trapezoid body
nTPM: 746.5
2159 Male, age 61, both hemispheres 1176.5
2735 Female, age 85, both hemispheres 950.3
1983 Male, age 76, both hemispheres 832.9
2166 Male, age 80, both hemispheres 519.0
2368 Female, age 91, both hemispheres 253.8
Nucleus ambiguus
nTPM: 496.5
2096 Female, age 85, both hemispheres 769.7
2071 Male, age 76, both hemispheres 223.2
Nucleus cuneatus
nTPM: 306.0
2131 Male, age 76, both hemispheres 552.0
2564 Male, age 74, both hemispheres 427.3
2100 Male, age 76, both hemispheres 410.1
2562 Male, age 61, both hemispheres 367.5
2376 Male, age 61, both hemispheres 320.0
2381 Male, age 80, both hemispheres 210.6
2808 Female, age 85, both hemispheres 203.5
2380 Male, age 80, both hemispheres 156.3
2805 Female, age 91, both hemispheres 106.8
Nucleus gracilis
nTPM: 214.2
2627 Male, age 74, both hemispheres 408.4
2382 Male, age 80, both hemispheres 126.3
2299 Female, age 85, both hemispheres 108.0
Nucleus raphe magnus
nTPM: 808.7
2160 Male, age 61, both hemispheres 1557.6
2455 Male, age 74, both hemispheres 1072.4
2172 Female, age 85, both hemispheres 880.6
2051 Male, age 76, both hemispheres 517.5
2328 Male, age 80, both hemispheres 503.2
2459 Female, age 91, both hemispheres 320.7
Nucleus raphe obscurus
nTPM: 284.6
2800 Male, age 61, midline 380.8
2845 Female, age 85, midline 321.5
2142 Male, age 76, midline 151.3
Nucleus raphe pallidus
nTPM: 448.7
2183 Male, age 80, midline 720.8
1924 Male, age 61, midline 475.6
2145 Male, age 76, midline 149.8
Nucleus tractus solitarii
nTPM: 524.9
2144 Female, age 91, right hemisphere 798.7
2656 Male, age 76, both hemispheres 497.2
2191 Female, age 85, both hemispheres 403.5
2307 Male, age 80, both hemispheres 400.2
Paramedian reticular nucleus
nTPM: 753.9
2057 Male, age 80, both hemispheres 938.4
2313 Male, age 61, both hemispheres 883.6
2050 Female, age 85, both hemispheres 757.5
2052 Male, age 76, both hemispheres 436.0
Parvicellular reticular nuclei
nTPM: 579.9
2119 Male, age 80, both hemispheres 690.6
2095 Male, age 76, both hemispheres 532.0
2558 Male, age 74, both hemispheres 517.0
Parvicellular reticular nuclei, medullary
nTPM: 646.6
2189 Female, age 91, both hemispheres 804.8
2091 Female, age 85, both hemispheres 647.8
2181 Male, age 80, left hemisphere 487.1
Pedunculopontine tegmental nucleus
nTPM: 511.1
2334 Male, age 80, both hemispheres 622.3
1921 Female, age 85, both hemispheres 519.1
2338 Male, age 61, both hemispheres 391.7
Peritrigeminal nucleus
nTPM: 592.8
2179 Male, age 61, both hemispheres 637.8
2067 Female, age 85, both hemispheres 572.7
2136 Male, age 76, both hemispheres 567.9
Pontine nuclei
nTPM: 785.2
2727 Male, age 61, right hemisphere 1582.1
2109 Female, age 72, unknown 846.3
1863 Male, age 55, unknown 833.8
2787 Female, age 85, both hemispheres 803.3
2454 Male, age 74, left hemisphere 737.7
1968 Male, age 76, left hemisphere 727.2
2115 Male, age 80, left hemisphere 407.7
2319 Female, age 91, both hemispheres 343.8
Pontine raphe nucleus
nTPM: 667.5
2122 Female, age 85, midline 763.0
2853 Male, age 76, midline 572.0
Posteroventral cochlear nucleus
nTPM: 382.0
2752 Female, age 85, both hemispheres 711.3
2070 Male, age 76, both hemispheres 507.6
2371 Male, age 61, both hemispheres 292.9
2341 Male, age 80, both hemispheres 215.6
2135 Female, age 91, both hemispheres 182.8
Prepositus hypoglossal nucleus
nTPM: 566.3
2855 Female, age 85, right hemisphere 697.7
2086 Male, age 80, both hemispheres 435.0
Principal sensory trigeminal nucleus
nTPM: 750.0
2158 Male, age 61, both hemispheres 1333.2
2008 Male, age 80, left hemisphere 804.9
2324 Male, age 76, both hemispheres 561.8
2367 Female, age 91, left hemisphere 300.0
Reticular pontine nucleus, caudal
nTPM: 501.7
2092 Male, age 76, both hemispheres 601.7
2332 Male, age 80, right hemisphere 592.4
2559 Male, age 74, both hemispheres 575.5
2457 Female, age 91, both hemispheres 237.0
Reticular pontine nucleus, oral
nTPM: 557.2
2361 Male, age 74, both hemispheres 1026.3
2012 Female, age 85, both hemispheres 629.2
1939 Male, age 80, both hemispheres 469.4
2167 Male, age 76, both hemispheres 436.0
2366 Female, age 91, both hemispheres 225.1
Reticulotegmental nucleus
nTPM: 487.4
2325 Male, age 76, both hemispheres 648.5
2452 Male, age 74, both hemispheres 479.8
2333 Male, age 80, both hemispheres 438.7
2322 Female, age 91, both hemispheres 382.7
Spinal trigeminal nucleus, caudal
nTPM: 520.5
2390 Female, age 91, both hemispheres 958.4
2447 Male, age 76, both hemispheres 570.3
2642 Male, age 74, both hemispheres 403.1
2308 Male, age 80, both hemispheres 344.7
2312 Male, age 61, both hemispheres 325.9
Spinal trigeminal nucleus, interpolar
nTPM: 763.3
2625 Male, age 61, both hemispheres 1126.3
2066 Male, age 76, right hemisphere 1043.5
2033 Male, age 80, both hemispheres 623.3
2386 Female, age 85, both hemispheres 526.1
2389 Female, age 91, both hemispheres 497.3
Spinal trigeminal nucleus, oral
nTPM: 534.4
2737 Female, age 85, both hemispheres 603.9
2164 Male, age 80, both hemispheres 588.2
1978 Male, age 76, both hemispheres 411.1
Spinal vestibular nucleus
nTPM: 536.7
2186 Female, age 91, both hemispheres 714.6
2780 Male, age 80, both hemispheres 668.2
2748 Male, age 76, both hemispheres 540.2
2806 Female, age 85, both hemispheres 491.6
2384 Male, age 74, both hemispheres 422.9
2796 Male, age 61, both hemispheres 382.5
Subcoeruleus area
nTPM: 522.1
2323 Female, age 91, left hemisphere 721.1
1958 Male, age 80, both hemispheres 573.0
2089 Male, age 76, left hemisphere 528.5
2451 Male, age 74, both hemispheres 419.0
2369 Female, age 85, left hemisphere 368.9
Superior olive
nTPM: 555.9
2364 Male, age 74, right hemisphere 737.7
1875 Female, age 85, both hemispheres 725.8
2020 Male, age 76, both hemispheres 541.6
2329 Male, age 80, right hemisphere 446.0
2561 Female, age 91, both hemispheres 328.6
Superior vestibular nucleus
nTPM: 507.8
2015 Male, age 80, both hemispheres 556.7
2383 Male, age 74, both hemispheres 509.5
2061 Male, age 76, both hemispheres 457.3
Ventral medullary reticular nucleus
nTPM: 383.4
2060 Male, age 76, both hemispheres 520.5
2372 Male, age 61, both hemispheres 246.2
Ventral periolivary nuclei
nTPM: 596.0
2130 Female, age 85, both hemispheres 804.0
2165 Male, age 80, both hemispheres 686.5
2023 Male, age 76, both hemispheres 478.5
2794 Female, age 91, left hemisphere 415.0
Ventrolateral medulla, A1-C1 cell groups
nTPM: 478.3
2741 Female, age 85, both hemispheres 687.5
1986 Male, age 76, both hemispheres 653.6
2180 Male, age 61, both hemispheres 491.7
2302 Female, age 91, both hemispheres 286.3
2118 Male, age 80, both hemispheres 272.6
Ventrolateral tegmental area, A5 NE cell group
nTPM: 490.1
2449 Male, age 74, both hemispheres 770.9
2359 Male, age 61, both hemispheres 536.4
1959 Male, age 76, both hemispheres 527.4
2840 Female, age 85, both hemispheres 483.9
2161 Male, age 80, both hemispheres 435.3
2456 Female, age 91, both hemispheres 186.9

PONS AND MEDULLA - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 2156.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 1073.3
FF:10182-103D2 60 years, female 1358.2
FF:10165-103B3 76 years, female 788.4
Medulla oblongata
Scaled Tags Per Million: 603.8
FF:10038-101F2 18-64 years, mixed 965.1
FF:10155-103A2 76 years, female 435.3
FF:10174-103C3 60 years, female 410.9
Pons
Scaled Tags Per Million: 2156.7
FF:10033-101E6 18-54 years, mixed 2156.7

PONS AND MEDULLA - Pig RNA-seqi
Max subtype nTPMi 955.2
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 778.1
Samples: 4

Max nTPM: 949.3
Min nTPM: 717.1
Sample A Female 725.8
Sample B Female 720.3
Sample C Male 949.3
Sample D Male 717.1
Pons
nTPM: 955.2
Samples: 4

Max nTPM: 1152.2
Min nTPM: 762.3
Sample A Female 1152.2
Sample B Female 762.3
Sample C Male 1009.2
Sample D Male 896.9

PONS AND MEDULLA - Mouse RNA-seqi
Max subtype nTPMi 532.0
Mouse sample Sample description nTPM
Pons and medulla
nTPM: 532.0
Samples: 4

Max nTPM: 699.6
Min nTPM: 393.2
Sample A Male 699.6
Sample B Male 447.7
Sample C Female 587.4
Sample D Female 393.2

PONS AND MEDULLA - Allen Mouse ISHi
Max subtype Expression energyi 17.8
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 17.8
79556674 Antisense, RP_071204_01_C07, Mouse strain C57BL/6J (56 days, male) 21.3
79632309 Antisense, RP_071204_01_C07, Mouse strain C57BL/6J (56 days, male) 18.2
1088 Antisense, RP_Baylor_253988, Mouse strain C57BL/6J (56 days, male) 14.2
1089 Antisense, RP_Baylor_253988, Mouse strain C57BL/6J (56 days, male) 13.1
Pons
Expression energy: 17.7
79556674 Antisense, RP_071204_01_C07, Mouse strain C57BL/6J (56 days, male) 21.3
79632309 Antisense, RP_071204_01_C07, Mouse strain C57BL/6J (56 days, male) 16.8
1089 Antisense, RP_Baylor_253988, Mouse strain C57BL/6J (56 days, male) 14.0
1088 Antisense, RP_Baylor_253988, Mouse strain C57BL/6J (56 days, male) 13.6

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