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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:606.1 nTPM
HPA Brain:175.5 nTPM
GTEx:606.1 nTPM
FANTOM5:593.3 Scaled Tags Per Million
Pig:64.3 nTPM
Mouse:611.6 nTPM
Allen mouse:5.8 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

175.5
Sample id Sample description nTPM
Amygdala
nTPM: 175.5
2514 Male, age 75, right hemisphere 207.3
1987 Female, age 91, left hemisphere 204.6
2695 Female, age 67, right hemisphere 181.2
2814 Male, age 76, right hemisphere 163.4
2517 Female, age 94, left hemisphere 120.8
Basal amygdala
nTPM: 131.5
1955 Male, age 76, both hemispheres 178.8
2609 Male, age 75, right hemisphere 156.7
2243 Female, age 91, right hemisphere 142.0
2110 Male, age 80, left hemisphere 141.2
2685 Female, age 94, left hemisphere 92.8
2827 Female, age 67, right hemisphere 77.5
Central amygdala
nTPM: 140.8
2239 Male, age 80, left hemisphere 165.4
2515 Male, age 75, right hemisphere 164.5
1905 Male, age 76, both hemispheres 162.0
2701 Female, age 91, right hemisphere 123.8
2826 Female, age 94, left hemisphere 88.3
Corticomedial amygdala
nTPM: 160.5
2240 Male, age 76, both hemispheres 218.2
2242 Female, age 91, right hemisphere 177.7
2428 Male, age 75, right hemisphere 174.0
2829 Male, age 80, left hemisphere 154.6
2429 Female, age 94, left hemisphere 140.9
2535 Female, age 67, right hemisphere 97.4
Lateral amygdala
nTPM: 122.2
1883 Male, age 76, both hemispheres 162.3
2516 Male, age 75, right hemisphere 153.0
2256 Male, age 80, left hemisphere 151.8
2255 Female, age 91, right hemisphere 97.2
2534 Female, age 94, left hemisphere 85.3
2830 Female, age 67, right hemisphere 83.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

606.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 606.1
Samples: 152

Max nTPM: 1725.0
Min nTPM: 104.4
Std nTPM: 256.0
Median nTPM: 558.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 1725.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1583.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1525.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1448.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 1358.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1196.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1193.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 1028.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 1020.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1012.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 1004.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1001.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 980.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 919.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 884.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 882.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 845.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 845.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 833.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 832.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 829.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 808.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 801.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 800.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 793.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 789.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 784.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 775.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 768.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 762.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 758.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 758.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 751.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 743.9
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 719.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 719.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 718.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 690.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 681.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 680.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 677.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 676.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 672.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 668.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 667.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 667.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 659.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 653.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 653.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 650.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 650.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 636.5
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 636.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 631.8
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 630.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 627.9
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 621.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 621.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 615.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 612.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 605.0
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 603.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 598.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 598.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 592.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 587.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 584.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 577.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 577.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 572.8
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 570.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 566.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 565.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 560.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 559.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 559.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 557.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 545.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 533.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 533.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 531.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 531.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 530.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 527.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 522.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 521.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 519.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 519.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 518.3
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 514.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 513.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 508.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 502.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 501.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 499.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 499.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 494.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 485.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 483.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 480.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 479.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 477.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 476.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 476.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 474.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 474.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 469.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 465.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 461.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 461.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 458.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 455.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 453.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 453.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 452.7
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 450.8
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 449.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 447.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 439.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 431.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 426.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 426.7
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 425.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 421.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 415.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 411.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 410.9
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 409.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 407.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 405.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 389.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 389.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 386.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 366.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 366.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 361.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 356.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 341.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 338.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 329.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 327.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 322.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 322.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 319.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 312.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 309.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 305.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 271.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 259.3
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 254.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 185.2
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 104.4
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

593.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 593.3
FF:10151-102I7 76 years, female 593.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

64.3
Pig sample Sample description nTPM
Amygdala
nTPM: 64.4
Samples: 4

Max nTPM: 71.3
Min nTPM: 47.6
Sample A Female 71.3
Sample B Female 71.0
Sample C Male 67.6
Sample D Male 47.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

611.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 611.6
Samples: 4

Max nTPM: 634.8
Min nTPM: 596.6
Sample A Male 596.6
Sample B Male 597.3
Sample C Female 617.8
Sample D Female 634.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

5.8
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 5.8
71836880 Antisense, RP_051017_02_E10, Mouse strain C57BL/6J (56 days, male) 7.2
68632649 Antisense, RP_050125_02_A01, Mouse strain C57BL/6J (56 days, male) 4.5

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