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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:538.7 nTPM
HPA Brain:237.8 nTPM
GTEx:538.7 nTPM
FANTOM5:889.4 Scaled Tags Per Million
Pig:182.5 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

237.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 233.1
2048 Male, age 55, midline 354.4
1981 Female, age 72, midline 314.9
2816 Male, age 47, midline 191.2
2194 Female, age 79, both hemispheres 186.7
2565 Male, age 75, midline 118.1
Cervical spinal cord, dorsal horn
nTPM: 237.8
2173 Female, age 72, unknown 317.3
2721 Male, age 90, both hemispheres 266.5
2069 Male, age 47, both hemispheres 259.3
2296 Male, age 66, both hemispheres 228.1
1877 Male, age 55, unknown 223.3
2297 Male, age 75, both hemispheres 132.0
Cervical spinal cord, ventral horn
nTPM: 205.3
2098 Female, age 72, unknown 404.4
2809 Male, age 90, both hemispheres 219.6
2295 Male, age 66, both hemispheres 190.4
2068 Male, age 55, unknown 169.2
2480 Male, age 75, both hemispheres 137.5
2820 Female, age 79, both hemispheres 110.5

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

538.7
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 538.7
Samples: 159

Max nTPM: 1483.0
Min nTPM: 247.2
Std nTPM: 186.5
Median nTPM: 505.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 1483.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 1125.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 1125.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 1010.3
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 964.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 907.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 900.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 891.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 885.1
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 855.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 843.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 842.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 835.6
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 823.3
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 821.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 813.7
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 806.0
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 780.8
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 765.3
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 762.9
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 751.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 722.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 719.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 704.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 683.8
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 681.6
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 680.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 679.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 674.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 669.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 661.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 657.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 648.2
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 647.0
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 641.9
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 634.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 626.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 622.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 619.9
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 617.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 615.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 612.5
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 610.8
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 607.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 599.1
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 594.9
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 593.3
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 588.4
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 586.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 585.3
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 585.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 583.9
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 580.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 578.5
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 573.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 568.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 568.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 566.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 563.7
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 561.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 561.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 557.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 548.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 546.5
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 545.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 542.1
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 538.4
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 532.9
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 532.7
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 523.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 519.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 517.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 516.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 516.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 510.9
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 509.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 508.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 506.5
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 505.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 505.1
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 505.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 503.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 499.4
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 498.5
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 495.9
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 491.5
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 490.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 489.7
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 486.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 485.4
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 482.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 478.3
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 474.0
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 469.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 468.5
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 465.6
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 461.6
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 458.1
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 457.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 455.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 452.1
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 451.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 449.0
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 444.6
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 434.9
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 434.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 432.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 432.2
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 431.5
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 430.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 422.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 422.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 419.0
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 417.8
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 416.6
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 415.0
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 413.9
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 412.8
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 407.8
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 406.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 405.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 404.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 398.4
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 398.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 398.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 395.4
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 392.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 390.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 385.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 381.5
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 381.2
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 380.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 377.3
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 373.3
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 369.5
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 368.3
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 363.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 356.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 353.0
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 352.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 350.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 350.0
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 348.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 340.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 339.8
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 334.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 332.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 327.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 322.6
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 322.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 320.2
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 317.9
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 310.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 309.4
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 300.6
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 293.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 274.6
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 266.0
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 247.2
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

889.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 889.4
FF:10181-103D1 60 years, female 961.5
FF:10159-103A6 76 years, female 817.2

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

182.5
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 118.8
Samples: 4

Max nTPM: 135.5
Min nTPM: 111.7
Sample A Female 113.7
Sample B Female 135.5
Sample C Male 114.1
Sample D Male 111.7
Ventral spinal cord
nTPM: 182.5
Samples: 4

Max nTPM: 195.1
Min nTPM: 170.4
Sample A Female 170.4
Sample B Female 195.1
Sample C Male 184.5
Sample D Male 180.1

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