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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:298.6 nTPM
HPA Brain:66.7 nTPM
GTEx:298.6 nTPM
FANTOM5:328.9 Scaled Tags Per Million
Pig:71.5 nTPM
Mouse:339.3 nTPM
Allen mouse:19.5 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

66.7
Sample id Sample description nTPM
Amygdala
nTPM: 66.7
2814 Male, age 76, right hemisphere 85.0
2695 Female, age 67, right hemisphere 77.9
2514 Male, age 75, right hemisphere 62.5
1987 Female, age 91, left hemisphere 56.7
2517 Female, age 94, left hemisphere 51.5
Basal amygdala
nTPM: 52.3
2609 Male, age 75, right hemisphere 59.0
2827 Female, age 67, right hemisphere 59.0
1955 Male, age 76, both hemispheres 57.1
2685 Female, age 94, left hemisphere 50.7
2110 Male, age 80, left hemisphere 46.1
2243 Female, age 91, right hemisphere 41.7
Central amygdala
nTPM: 57.3
1905 Male, age 76, both hemispheres 70.9
2826 Female, age 94, left hemisphere 61.9
2515 Male, age 75, right hemisphere 57.0
2701 Female, age 91, right hemisphere 50.1
2239 Male, age 80, left hemisphere 46.4
Corticomedial amygdala
nTPM: 48.9
2428 Male, age 75, right hemisphere 55.1
2829 Male, age 80, left hemisphere 53.3
2429 Female, age 94, left hemisphere 52.4
2240 Male, age 76, both hemispheres 49.9
2242 Female, age 91, right hemisphere 47.9
2535 Female, age 67, right hemisphere 34.7
Lateral amygdala
nTPM: 53.6
1883 Male, age 76, both hemispheres 72.8
2830 Female, age 67, right hemisphere 68.6
2516 Male, age 75, right hemisphere 59.2
2534 Female, age 94, left hemisphere 44.7
2256 Male, age 80, left hemisphere 41.3
2255 Female, age 91, right hemisphere 34.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

298.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 298.6
Samples: 152

Max nTPM: 1050.1
Min nTPM: 112.0
Std nTPM: 111.8
Median nTPM: 278.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1050.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 734.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 692.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 617.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 559.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 547.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 505.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 500.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 485.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 465.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 427.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 427.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 390.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 387.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 387.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 385.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 382.5
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 375.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 372.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 363.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 363.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 360.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 359.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 357.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 356.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 349.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 348.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 348.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 347.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 346.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 346.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 343.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 342.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 342.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 340.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 336.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 336.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 335.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 334.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 333.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 332.1
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 331.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 328.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 327.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 325.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 323.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 323.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 323.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 322.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 315.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 315.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 314.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 310.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 309.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 308.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 308.3
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 307.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 307.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 306.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 304.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 300.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 300.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 297.1
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 296.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 295.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 295.8
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 294.1
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 292.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 288.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 288.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 285.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 284.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 283.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 282.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 281.4
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 278.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 277.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 276.3
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 275.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 275.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 275.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 272.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 271.8
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 269.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 268.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 266.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 266.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 265.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 263.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 263.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 263.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 261.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 261.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 260.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 259.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 259.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 258.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 257.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 254.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 251.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 249.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 248.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 248.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 247.0
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 245.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 243.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 243.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 242.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 242.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 242.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 240.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 237.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 237.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 235.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 234.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 233.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 232.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 231.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 230.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 230.0
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 227.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 225.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 224.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 224.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 223.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 222.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 221.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 219.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 215.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 214.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 212.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 212.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 212.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 211.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 209.6
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 207.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 204.8
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 203.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 202.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 198.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 197.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 185.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 181.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 181.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 178.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 170.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 168.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 165.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 160.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 142.6
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 115.3
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 112.0
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

328.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 328.9
FF:10151-102I7 76 years, female 328.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

71.5
Pig sample Sample description nTPM
Amygdala
nTPM: 71.5
Samples: 4

Max nTPM: 96.0
Min nTPM: 55.7
Sample A Female 96.0
Sample B Female 73.0
Sample C Male 55.7
Sample D Male 61.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

339.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 339.3
Samples: 4

Max nTPM: 354.1
Min nTPM: 327.1
Sample A Male 327.1
Sample B Male 334.1
Sample C Female 354.1
Sample D Female 341.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

19.5
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 19.5
293241 Antisense, RP_040609_01_G11, Mouse strain C57BL/6J (56 days, male) 19.5
323595 Antisense, RP_040609_01_G11, Mouse strain C57BL/6J (56 days, male) 8.8

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