MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:320.7 nTPM
HPA Brain:80.7 nTPM
GTEx:320.7 nTPM
FANTOM5:347.2 Scaled Tags Per Million
Pig:127.8 nTPM
Mouse:465.6 nTPM
Allen mouse:17.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 80.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 63.0
2019 Male, age 18, unknown 78.3
1827 Male, age 72, unknown 70.4
2411 Female, age 72, unknown 68.8
1870 Female, age 42, unknown 68.1
1833 Male, age 53, unknown 62.1
2666 Male, age 74, left hemisphere 61.8
1830 Male, age 51, unknown 57.0
2219 Male, age 76, both hemispheres 57.0
2828 Female, age 72, unknown 55.1
2586 Male, age 75, left hemisphere 50.9
Dorsal raphe nucleus
nTPM: 68.3
1828 Male, age 53, unknown 83.9
2298 Female, age 72, unknown 71.7
2016 Female, age 72, unknown 64.0
2750 Male, age 76, both hemispheres 61.2
2047 Male, age 72, unknown 60.7
Inferior colliculus
nTPM: 70.9
1890 Male, age 53, unknown 77.5
2097 Female, age 72, unknown 72.5
2849 Male, age 72, unknown 71.6
1848 Female, age 42, unknown 62.0
Median raphe nucleus
nTPM: 62.1
2220 Male, age 76, midline 62.1
Periaquaductal grey, anterior
nTPM: 66.1
1947 Male, age 18, unknown 68.6
2502 Female, age 75, unknown 68.1
1795 Male, age 51, unknown 61.7
Periaquaductal grey, dorsal
nTPM: 60.1
2850 Male, age 76, both hemispheres 66.2
1840 Male, age 53, unknown 62.7
1831 Male, age 72, unknown 59.7
2464 Female, age 72, unknown 51.8
Periaquaductal grey, lateral
nTPM: 57.8
2053 Male, age 18, unknown 58.9
2272 Male, age 74, both hemispheres 58.1
2140 Male, age 76, both hemispheres 56.5
Pretectal area
nTPM: 72.4
1817 Female, age 42, unknown 95.7
1816 Male, age 51, unknown 91.3
2007 Male, age 72, unknown 89.5
1944 Female, age 72, unknown 85.5
1815 Male, age 53, unknown 80.2
2667 Female, age 75, unknown 69.9
2224 Female, age 72, unknown 61.2
2273 Male, age 74, both hemispheres 59.8
2825 Male, age 18, unknown 57.3
2407 Male, age 75, both hemispheres 54.2
2316 Male, age 76, right hemisphere 51.9
Red nucleus
nTPM: 72.0
1821 Female, age 72, unknown 93.2
2725 Female, age 75, unknown 87.5
2584 Male, age 75, left hemisphere 83.7
2503 Female, age 72, unknown 83.5
1865 Male, age 51, unknown 68.6
2588 Male, age 74, left hemisphere 68.2
1904 Male, age 53, unknown 66.1
2785 Male, age 18, unknown 65.3
2769 Male, age 72, unknown 63.3
2227 Male, age 72, unknown 63.1
2823 Male, age 76, right hemisphere 61.0
1954 Female, age 42, unknown 60.2
Substantia nigra
nTPM: 80.7
2409 Female, age 72, unknown 95.1
1889 Female, age 72, unknown 94.5
1916 Female, age 42, unknown 92.0
2665 Male, age 74, both hemispheres 83.5
2241 Male, age 72, unknown 82.7
2699 Male, age 18, unknown 82.4
1851 Male, age 51, unknown 82.0
1941 Male, age 53, unknown 73.3
2583 Male, age 75, right hemisphere 63.0
2590 Female, age 75, unknown 58.3
Superior colliculus
nTPM: 64.5
2587 Male, age 74, left hemisphere 82.2
2668 Female, age 75, unknown 69.9
1895 Male, age 76, right hemisphere 68.2
2087 Female, age 72, unknown 67.1
1913 Female, age 42, unknown 65.4
1839 Male, age 51, unknown 63.1
2261 Male, age 18, unknown 62.8
1995 Male, age 72, unknown 60.6
1796 Male, age 53, unknown 55.4
2664 Male, age 75, both hemispheres 50.7
Ventral tegmental area
nTPM: 66.4
2410 Female, age 72, unknown 77.9
1915 Female, age 42, unknown 70.7
2223 Female, age 72, unknown 67.6
2218 Male, age 76, both hemispheres 65.0
1942 Male, age 51, unknown 61.4
2021 Male, age 53, unknown 55.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 320.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 320.7
Samples: 139

Max nTPM: 776.1
Min nTPM: 155.3
Std nTPM: 92.8
Median nTPM: 305.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 776.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 687.2
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 568.1
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 550.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 537.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 498.9
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 452.2
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 448.6
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 441.2
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 437.7
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 437.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 347.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 347.2
FF:10158-103A5 76 years, female 347.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 127.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 106.2
Samples: 4

Max nTPM: 145.3
Min nTPM: 72.6
Sample A Female 145.3
Sample B Female 82.2
Sample C Male 124.7
Sample D Male 72.6
Midbrain
nTPM: 115.6
Samples: 4

Max nTPM: 143.9
Min nTPM: 88.5
Sample A Female 88.5
Sample B Female 107.7
Sample C Male 143.9
Sample D Male 122.1
Periaqueductal gray
nTPM: 95.2
Samples: 3

Max nTPM: 105.7
Min nTPM: 89.6
Sample B Female 89.6
Sample C Male 105.7
Sample D Male 90.4
Superior colliculi
nTPM: 127.9
Samples: 4

Max nTPM: 172.1
Min nTPM: 69.2
Sample A Female 142.0
Sample B Female 69.2
Sample C Male 172.1
Sample D Male 128.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 465.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 465.6
Samples: 4

Max nTPM: 481.2
Min nTPM: 452.7
Sample A Male 481.2
Sample B Male 457.5
Sample C Female 470.8
Sample D Female 452.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 17.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 17.0
293241 Antisense, RP_040609_01_G11, Mouse strain C57BL/6J (56 days, male) 17.0
323595 Antisense, RP_040609_01_G11, Mouse strain C57BL/6J (56 days, male) 7.9

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