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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:240.7 nTPM
FANTOM5:354.0 Scaled Tags Per Million
Pig:94.4 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA043060
Glial cells High
Neuronal cells High



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

240.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 240.7
Samples: 246

Max nTPM: 656.6
Min nTPM: 118.2
Std nTPM: 72.1
Median nTPM: 226.1
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 656.6
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 631.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 528.2
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 511.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 457.3
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 423.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 422.8
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 422.1
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 417.7
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 358.9
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 349.9
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 349.8
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 349.4
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 348.7
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 346.5
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 346.2
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 345.9
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 333.3
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 332.8
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 332.3
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 329.8
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 329.6
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 329.5
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 328.8
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 328.7
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 324.9
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 323.4
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 322.3
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 319.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 318.5
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 317.6
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 316.8
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 313.0
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 310.2
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 308.6
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 307.3
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 303.7
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 300.3
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 294.2
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 290.3
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 289.4
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 288.3
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 288.2
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 286.2
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 285.8
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 285.3
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 284.5
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 282.6
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 280.7
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 280.2
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 277.4
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 275.8
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 272.9
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 272.2
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 271.9
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 269.3
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 268.8
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 267.1
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 265.1
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 264.6
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 264.0
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 263.4
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 261.9
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 260.7
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 259.7
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 258.5
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 257.9
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 257.9
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 256.9
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 256.9
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 256.2
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 256.1
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 255.5
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 255.2
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 254.9
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 254.9
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 254.4
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 254.1
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 253.9
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 253.4
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 253.1
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 249.8
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 249.5
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 249.3
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 249.1
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 248.7
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 245.6
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 245.5
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 243.7
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 242.9
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 242.8
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 242.7
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 241.7
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 239.8
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 239.4
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 239.2
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 238.7
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 237.0
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 236.7
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 236.2
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 235.5
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 234.8
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 233.9
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 233.8
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 233.4
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 233.3
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 233.1
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 232.5
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 232.5
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 232.1
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 232.1
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 231.8
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 231.6
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 229.9
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 228.9
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 228.8
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 228.4
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 227.9
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 227.9
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 227.7
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 227.0
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 226.9
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 226.3
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 226.0
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 225.4
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 225.1
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 224.1
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 224.0
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 223.7
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 223.5
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 223.0
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 222.9
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 222.5
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 222.5
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 222.4
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 221.6
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 221.0
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 221.0
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 220.9
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 220.5
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 219.9
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 219.8
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 219.1
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 218.8
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 217.9
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 217.6
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 216.0
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 214.5
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 214.1
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 213.4
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 213.1
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 211.3
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 210.1
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 209.8
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 209.6
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 209.3
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 208.2
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 208.0
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 207.8
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 207.3
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 207.0
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 206.6
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 206.4
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 205.7
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 205.7
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 204.9
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 204.7
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 204.6
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 204.4
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 203.8
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 203.5
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 203.4
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 202.7
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 202.4
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 201.9
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 201.6
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 201.1
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 201.0
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 200.7
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 200.1
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 199.7
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 199.2
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 199.1
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 197.8
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 197.7
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 196.3
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 196.0
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 195.8
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 195.5
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 194.0
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 192.9
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 192.3
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 191.8
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 190.9
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 190.3
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 190.0
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 189.0
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 188.8
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 188.3
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 188.0
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 187.6
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 186.9
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 186.7
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 186.6
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 186.2
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 185.5
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 184.4
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 184.4
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 184.1
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 184.0
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 183.0
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 182.8
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 182.4
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 181.2
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 180.9
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 179.0
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 178.4
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 177.0
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 176.6
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 176.3
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 176.1
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 176.0
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 174.4
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 173.0
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 168.5
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 168.0
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 167.4
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 165.9
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 164.4
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 164.3
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 164.1
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 160.5
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 159.6
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 159.3
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 158.9
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 157.4
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 156.9
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 156.5
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 153.1
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 152.8
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 145.1
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 143.6
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 143.1
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 136.5
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 127.2
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 118.2
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

354.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 354.0
FF:10164-103B2 76 years, female 354.0

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

94.4
Pig sample Sample description nTPM
Caudate
nTPM: 94.4
Samples: 4

Max nTPM: 107.6
Min nTPM: 81.0
Sample A Female 101.2
Sample B Female 81.0
Sample C Male 107.6
Sample D Male 87.7

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